View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6213_high_15 (Length: 251)

Name: NF6213_high_15
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6213_high_15
NF6213_high_15
[»] chr4 (38 HSPs)
chr4 (105-248)||(31623369-31623512)
chr4 (117-248)||(43938407-43938538)
chr4 (113-239)||(8080939-8081065)
chr4 (109-248)||(30112863-30113002)
chr4 (109-248)||(26918329-26918468)
chr4 (109-230)||(51943435-51943555)
chr4 (109-213)||(7111752-7111856)
chr4 (150-248)||(10657016-10657114)
chr4 (150-248)||(10871161-10871259)
chr4 (150-248)||(43939251-43939349)
chr4 (150-248)||(50791592-50791690)
chr4 (150-248)||(51942613-51942711)
chr4 (147-248)||(8079608-8079709)
chr4 (109-186)||(40846586-40846663)
chr4 (154-248)||(49647693-49647787)
chr4 (150-237)||(26919178-26919265)
chr4 (150-248)||(10657826-10657924)
chr4 (150-248)||(10871971-10872069)
chr4 (156-239)||(49646901-49646984)
chr4 (109-170)||(43594093-43594151)
chr4 (105-149)||(31624501-31624545)
chr4 (105-149)||(43590486-43590530)
chr4 (110-149)||(10658986-10659025)
chr4 (110-149)||(10873131-10873170)
chr4 (110-149)||(24577739-24577778)
chr4 (109-152)||(47650663-47650706)
chr4 (113-149)||(19871076-19871112)
chr4 (109-149)||(48952986-48953026)
chr4 (107-149)||(43940204-43940246)
chr4 (105-149)||(7113692-7113736)
chr4 (109-149)||(14269926-14269966)
chr4 (113-149)||(49645985-49646021)
chr4 (109-149)||(50790780-50790820)
chr4 (109-149)||(50792519-50792559)
chr4 (110-149)||(19869917-19869956)
chr4 (109-144)||(38623446-38623481)
chr4 (110-149)||(51941060-51941099)
chr4 (109-149)||(26923642-26923682)
[»] chr2 (28 HSPs)
chr2 (109-248)||(39160052-39160191)
chr2 (109-248)||(39209003-39209142)
chr2 (109-248)||(18248385-18248524)
chr2 (150-239)||(14453948-14454037)
chr2 (150-248)||(33180615-33180713)
chr2 (150-248)||(36601839-36601937)
chr2 (150-239)||(6321184-6321273)
chr2 (150-237)||(18247552-18247639)
chr2 (150-248)||(33179799-33179897)
chr2 (150-239)||(6320369-6320458)
chr2 (109-239)||(21191580-21191704)
chr2 (150-248)||(14453130-14453228)
chr2 (109-149)||(14454465-14454505)
chr2 (109-149)||(18246647-18246687)
chr2 (109-149)||(24520321-24520361)
chr2 (109-148)||(6319493-6319532)
chr2 (109-152)||(27478954-27478997)
chr2 (114-152)||(20919764-20919802)
chr2 (109-149)||(6322243-6322283)
chr2 (109-149)||(33182672-33182712)
chr2 (109-149)||(36600893-36600933)
chr2 (109-148)||(14452257-14452296)
chr2 (109-152)||(24460615-24460658)
chr2 (109-149)||(33178917-33178957)
chr2 (113-149)||(36602835-36602871)
chr2 (117-152)||(518256-518291)
chr2 (110-149)||(38932341-38932380)
chr2 (107-139)||(2291460-2291492)
[»] scaffold0014 (3 HSPs)
scaffold0014 (109-248)||(69686-69825)
scaffold0014 (147-239)||(70657-70749)
scaffold0014 (109-149)||(71655-71695)
[»] chr7 (32 HSPs)
chr7 (109-248)||(1599614-1599753)
chr7 (109-248)||(38229509-38229648)
chr7 (109-230)||(41407916-41408037)
chr7 (109-230)||(47254499-47254620)
chr7 (109-248)||(43543194-43543333)
chr7 (107-248)||(46160497-46160640)
chr7 (150-237)||(595311-595398)
chr7 (150-239)||(1600477-1600566)
chr7 (150-237)||(38226274-38226361)
chr7 (150-227)||(33980617-33980694)
chr7 (150-239)||(33981435-33981524)
chr7 (147-227)||(585047-585127)
chr7 (151-239)||(46159693-46159781)
chr7 (109-239)||(19064124-19064248)
chr7 (150-248)||(42832035-42832133)
chr7 (105-149)||(38224540-38224584)
chr7 (150-206)||(43544080-43544136)
chr7 (150-213)||(41407823-41407886)
chr7 (152-206)||(47253692-47253746)
chr7 (109-149)||(37708194-37708234)
chr7 (109-149)||(41406144-41406184)
chr7 (109-152)||(37623981-37624024)
chr7 (105-142)||(596216-596253)
chr7 (109-149)||(1602229-1602269)
chr7 (105-149)||(33982418-33982462)
chr7 (188-248)||(42832853-42832913)
chr7 (113-149)||(43544999-43545035)
chr7 (110-149)||(42825812-42825851)
chr7 (110-149)||(47252174-47252213)
chr7 (109-149)||(42833827-42833867)
chr7 (112-143)||(585997-586028)
chr7 (108-142)||(33979571-33979605)
[»] chr5 (21 HSPs)
chr5 (109-248)||(34858476-34858615)
chr5 (109-239)||(8525536-8525666)
chr5 (109-248)||(37250376-37250515)
chr5 (109-239)||(5100435-5100565)
chr5 (109-239)||(29639530-29639660)
chr5 (110-239)||(29640198-29640326)
chr5 (150-248)||(15525199-15525297)
chr5 (109-213)||(3035679-3035783)
chr5 (150-248)||(3034866-3034964)
chr5 (150-248)||(5101221-5101319)
chr5 (150-248)||(15526015-15526111)
chr5 (109-223)||(29390729-29390837)
chr5 (150-248)||(8524723-8524821)
chr5 (149-213)||(34859376-34859440)
chr5 (109-149)||(8520453-8520493)
chr5 (115-152)||(6719689-6719726)
chr5 (110-147)||(29389182-29389219)
chr5 (193-237)||(37251228-37251272)
chr5 (150-197)||(37252535-37252582)
chr5 (113-149)||(15524322-15524358)
chr5 (109-149)||(37256212-37256252)
[»] chr8 (24 HSPs)
chr8 (109-239)||(31640313-31640443)
chr8 (110-239)||(41671224-41671353)
chr8 (150-248)||(35021145-35021243)
chr8 (150-239)||(38363551-38363640)
chr8 (150-237)||(41670446-41670533)
chr8 (150-248)||(19142034-19142132)
chr8 (150-248)||(38362732-38362830)
chr8 (150-248)||(35021955-35022053)
chr8 (144-248)||(26920314-26920418)
chr8 (144-248)||(26951032-26951136)
chr8 (107-149)||(15825739-15825781)
chr8 (109-149)||(31642852-31642892)
chr8 (109-149)||(35019443-35019483)
chr8 (109-152)||(39069038-39069081)
chr8 (177-239)||(26950253-26950315)
chr8 (109-149)||(19143025-19143065)
chr8 (110-150)||(23625866-23625906)
chr8 (107-149)||(43129544-43129586)
chr8 (107-144)||(23625962-23625999)
chr8 (147-248)||(31641173-31641265)
chr8 (105-137)||(26951129-26951161)
chr8 (110-149)||(38364574-38364613)
chr8 (109-137)||(26920411-26920439)
chr8 (109-149)||(29725697-29725737)
[»] chr3 (33 HSPs)
chr3 (109-239)||(48073683-48073813)
chr3 (109-248)||(42879454-42879593)
chr3 (109-248)||(39131691-39131830)
chr3 (109-248)||(42164161-42164300)
chr3 (109-239)||(43862339-43862469)
chr3 (150-248)||(43861547-43861645)
chr3 (150-248)||(50937408-50937506)
chr3 (152-239)||(39130891-39130978)
chr3 (109-239)||(36465829-36465962)
chr3 (150-239)||(42878649-42878738)
chr3 (150-248)||(22978865-22978963)
chr3 (147-239)||(43358488-43358581)
chr3 (150-248)||(2228375-2228473)
chr3 (150-248)||(50936601-50936699)
chr3 (150-239)||(22979684-22979773)
chr3 (147-248)||(48072877-48072978)
chr3 (159-248)||(42165008-42165097)
chr3 (150-239)||(7042568-7042654)
chr3 (109-239)||(36471561-36471683)
chr3 (109-149)||(41889524-41889564)
chr3 (109-149)||(42167435-42167475)
chr3 (109-149)||(42877196-42877236)
chr3 (109-149)||(50938340-50938380)
chr3 (107-150)||(22978032-22978075)
chr3 (109-152)||(32001045-32001088)
chr3 (109-152)||(55136449-55136492)
chr3 (109-149)||(2229273-2229313)
chr3 (109-149)||(43359385-43359425)
chr3 (109-149)||(43860682-43860722)
chr3 (109-149)||(48071932-48071972)
chr3 (109-147)||(41888765-41888803)
chr3 (109-149)||(39129256-39129296)
chr3 (117-150)||(7041694-7041727)
[»] chr1 (12 HSPs)
chr1 (109-248)||(23260777-23260914)
chr1 (147-248)||(23260104-23260205)
chr1 (156-239)||(4639228-4639311)
chr1 (109-149)||(4640196-4640236)
chr1 (109-149)||(43847532-43847572)
chr1 (109-149)||(44110035-44110075)
chr1 (105-149)||(44299270-44299314)
chr1 (109-149)||(44300047-44300087)
chr1 (110-149)||(11756975-11757014)
chr1 (107-149)||(23259039-23259081)
chr1 (114-150)||(4638354-4638390)
chr1 (110-141)||(42159569-42159600)
[»] scaffold0217 (3 HSPs)
scaffold0217 (109-186)||(854-931)
scaffold0217 (150-248)||(20310-20408)
scaffold0217 (193-248)||(19541-19596)
[»] chr6 (13 HSPs)
chr6 (113-222)||(13868996-13869105)
chr6 (150-239)||(13868184-13868273)
chr6 (147-247)||(24160173-24160273)
chr6 (150-239)||(15509070-15509159)
chr6 (109-149)||(5090187-5090227)
chr6 (150-248)||(32561561-32561652)
chr6 (188-239)||(12503661-12503712)
chr6 (109-149)||(34574698-34574738)
chr6 (109-148)||(15508305-15508344)
chr6 (150-213)||(32560768-32560831)
chr6 (109-149)||(13866220-13866260)
chr6 (109-149)||(24159194-24159234)
chr6 (113-149)||(32562514-32562550)
[»] scaffold0009 (1 HSPs)
scaffold0009 (109-149)||(94507-94547)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 105 - 248
Target Start/End: Original strand, 31623369 - 31623512
Alignment:
Q  105 aggacttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaat 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||| ||||||    
T  31623369 aggacttgtaacaattaaaatttcacatcaaattcaacccatcatatacgtttataaattttgttccattccaaaacctagaacacacataacatgcaat 31623468  T
Q  205 tttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||||||||||||||||||||||||  |||||||    
T  31623469 tttttcttcattcttcttcccatcttaattgttcaattctctcg 31623512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 117 - 248
Target Start/End: Original strand, 43938407 - 43938538
Alignment:
Q  117 aattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcatt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| || ||||||    
T  43938407 aattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctaaaacacacataacgtgcaatttcttgttcatt 43938506  T
Q  217 cttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||| ||||||||  |||||||    
T  43938507 cttcttcccatcttgattgttcaattctctcg 43938538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 113 - 239
Target Start/End: Complemental strand, 8081065 - 8080939
Alignment:
Q  113 taacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttctt 212  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| |||||    
T  8081065 taacaattaaaattttacatcaaattcaacccatcatatacgttcataaattttgtttcattccaaaacctagaacacaaataacgtgcaatttcttctt 8080966  T
Q  213 cattcttcttcccatcttaattgttca 239  Q
    |||||||||| ||||||| ||||||||    
T  8080965 cattcttctttccatcttgattgttca 8080939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 30112863 - 30113002
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  ||||||||||||||      
T  30112863 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgtgccattccaaaacctagaacacgcataacgtgcaatttcc 30112962  T
Q  209 tcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||| |||||||||| || | ||||||  |||||||    
T  30112963 tcttcatttttcttcccattttgactgttcaattctctcg 30113002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 26918329 - 26918468
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||| | ||||  |||| |||||||| |    
T  26918329 cttgtaacaattaaaatttcacatcaaattcaactcatcatatacgcttataaattttgttccattccaaaacctataacacacgtaacatgcaatttct 26918428  T
Q  209 tcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||||| |||||| ||||||||  |||||||    
T  26918429 tcttcattcttcttctcatcttgattgttcaattctctcg 26918468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 109 - 230
Target Start/End: Complemental strand, 51943555 - 51943435
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||| |||| ||||| |||||||| |    
T  51943555 cttgaaacaattaaaatttcacatcaaattcaacacatcatatacgttcataaattttgttacattccaaaa-ctagaacacacataacatgcaatttct 51943457  T
Q  209 tcttcattcttcttcccatctt 230  Q
    |||||||| |||||||||||||    
T  51943456 tcttcatttttcttcccatctt 51943435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 109 - 213
Target Start/End: Original strand, 7111752 - 7111856
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | |||| |||||||||||||| |    
T  7111752 cttgtaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccattgcaaaacctataacacacataacgtgcaatttct 7111851  T
Q  209 tcttc 213  Q
    |||||    
T  7111852 tcttc 7111856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 10657016 - 10657114
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||||||||||||||||| ||||||||  |||||||    
T  10657016 atacgttcataaattttgttccattccaaaacctagaacacacataacgtacaatttcttcttcattcttcttcccatcttgattgttcaattctctcg 10657114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 10871161 - 10871259
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||||||||||||||||| ||||||||  |||||||    
T  10871161 atacgttcataaattttgttccattccaaaacctagaacacacataacgtacaatttcttcttcattcttcttcccatcttgattgttcaattctctcg 10871259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 43939349 - 43939251
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||    
T  43939349 atacgttcataaattttgttctattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttcaattctctcg 43939251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 50791690 - 50791592
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| ||||||||||||||||| ||||| ||||||||  |||||||    
T  50791690 atacgttcataaattttgttccattctaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcctatcttgattgttcaattctctcg 50791592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 51942613 - 51942711
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||| ||||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||| ||||||||  |||||||    
T  51942613 atacgttcataaaatttgttccattccaaaacctagaacacacataacatgcaatttcttcttcattcttcttcccatcttgattgttcaattctctcg 51942711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 8079608 - 8079709
Alignment:
Q  147 catatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctct 246  Q
    ||||||| ||||||||||||||| |||||||||||||||| |||| |||||||||||||| ||||||||| ||||||||||||| ||||||||  |||||    
T  8079608 catatacattcataaattttgtttcattccaaaacctagaacacacataacgtgcaatttcttcttcatttttcttcccatcttgattgttcaattctct 8079707  T
Q  247 cg 248  Q
    ||    
T  8079708 cg 8079709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 40846663 - 40846586
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctaga 186  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||    
T  40846663 cttgtaacaattaaaatttcacatcaaattcaacctatcatatacgtttataaattttgttccattcaaaaacctaga 40846586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 49647787 - 49647693
Alignment:
Q  154 gttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||||||| ||||||||||||||| |||  |||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||    
T  49647787 gttcataaattttgttcaattccaaaacctagaacacgcataacgtgcaatttcttcttcattcttcttcccatcttgattgttcaattctctcg 49647693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 26919265 - 26919178
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgtt 237  Q
    ||||||||||||||||||||||| ||||||||||||| || | |||||||||||||| ||||||||| ||||||||||||| ||||||    
T  26919265 atacgttcataaattttgttccactccaaaacctagaacaaacataacgtgcaatttcttcttcattattcttcccatctttattgtt 26919178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 10657924 - 10657826
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||| |||||||||||||||||||||||||||||||| |||| | ||| |||||||| ||||||||||||||||||||||  ||||||||  |||||||    
T  10657924 atacattcataaattttgttccattccaaaacctagaacacacacaacttgcaatttcttcttcattcttcttcccatctacattgttcaattctctcg 10657826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 10872069 - 10871971
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||| |||||||||||||||||||||||||||||||| |||| | ||| |||||||| ||||||||||||||||||||||  ||||||||  |||||||    
T  10872069 atacattcataaattttgttccattccaaaacctagaacacacacaacttgcaatttcttcttcattcttcttcccatctacattgttcaattctctcg 10871971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 49646901 - 49646984
Alignment:
Q  156 tcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    ||||||||||||||| ||||||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||  |||||||    
T  49646901 tcataaattttgttcaattccaaaacctagaacacacataacgtgcaatttcttcttcattattcttcccatcttggttgttca 49646984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 43594151 - 43594093
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttc 170  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  43594151 cttgtaacaattaaaatttcacatcaaattcaacc---catatacgttcataaattttgttc 43594093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 31624545 - 31624501
Alignment:
Q  105 aggacttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  31624545 aggacttgtaacaattaaaatttcacatcaaattcaacacatcat 31624501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 43590486 - 43590530
Alignment:
Q  105 aggacttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  43590486 aggacttgtaacaattaaaatttaacatcaaattcaacccatcat 43590530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 10659025 - 10658986
Alignment:
Q  110 ttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10659025 ttgtaacaattaaaatttcacatcaaattcaacccatcat 10658986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 10873170 - 10873131
Alignment:
Q  110 ttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10873170 ttgtaacaattaaaatttcacatcaaattcaacccatcat 10873131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 24577778 - 24577739
Alignment:
Q  110 ttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24577778 ttgtaacaattaaaatttcacatcaaattcaacccatcat 24577739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 47650706 - 47650663
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatata 152  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  47650706 cttgtaacaattaaaatttcacatcaaatttaacccatcatata 47650663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 19871112 - 19871076
Alignment:
Q  113 taacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||    
T  19871112 taacaattaaaatttcacatcaaattcaacccatcat 19871076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 48952986 - 48953026
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  48952986 cttgtaacaattaaaatttcacatcaaattcaatccatcat 48953026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 43940246 - 43940204
Alignment:
Q  107 gacttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||| |||||||||||||||||||||| ||||||||||||||    
T  43940246 gacttctaacaattaaaatttcacatcatattcaacccatcat 43940204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 7113736 - 7113692
Alignment:
Q  105 aggacttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||    
T  7113736 aggacatgtaacaattaaaattttacatcaaattcaaccgatcat 7113692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 14269966 - 14269926
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||| |||||||| |||||||||    
T  14269966 cttgtaacaattaaaatttcacctcaaattcgacccatcat 14269926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 49645985 - 49646021
Alignment:
Q  113 taacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||| ||||||    
T  49645985 taacaattaaaatttcacatcaaattcaactcatcat 49646021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 50790780 - 50790820
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  50790780 cttgcaacaattaaaatttcacatcaaattcaacacatcat 50790820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 50792559 - 50792519
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||| ||| ||||||    
T  50792559 cttgtaacaattaaaatttcacatcaaattaaactcatcat 50792519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 19869917 - 19869956
Alignment:
Q  110 ttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||| |||||||||||||||||||||| |||||||    
T  19869917 ttgtaacaactaaaatttcacatcaaattcaatccatcat 19869956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 144
Target Start/End: Complemental strand, 38623481 - 38623446
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaaccc 144  Q
    ||||||||||||||||||||||||||| ||||||||    
T  38623481 cttgtaacaattaaaatttcacatcaagttcaaccc 38623446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 51941060 - 51941099
Alignment:
Q  110 ttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  51941060 ttgtaacaattaaaatttcacatcaaattctactcatcat 51941099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 26923682 - 26923642
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||| ||||||||||| | |||||||||||||||||||    
T  26923682 cttgtaagaattaaaattttatatcaaattcaacccatcat 26923642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 39160052 - 39160191
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |    
T  39160052 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaacacacataacgtacaatttct 39160151  T
Q  209 tcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||||||||||| ||||||||  |||||||    
T  39160152 tcttcattcttcttcccatcttgattgttcaattctctcg 39160191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 109 - 248
Target Start/End: Complemental strand, 39209142 - 39209003
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |    
T  39209142 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaacacacataacgtacaatttct 39209043  T
Q  209 tcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||||||||||| ||||||||  |||||||    
T  39209042 tcttcattcttcttcccatcttgattgttcaattctctcg 39209003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 109 - 248
Target Start/End: Complemental strand, 18248524 - 18248385
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | || |||||| ||||||| |    
T  18248524 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgtttcattccaaaacctagaacgcaaataacgcgcaatttct 18248425  T
Q  209 tcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||||||||||| |||| |||  |||||||    
T  18248424 tcttcattcttcttcccatcttgattgctcaattctctcg 18248385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 14454037 - 14453948
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  14454037 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 14453948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 33180713 - 33180615
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||||||||||||||| |||| ||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||    
T  33180713 atacgttcataaattttgttccattctaaaatctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttcaattctctcg 33180615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 36601937 - 36601839
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||||||||||| ||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||    
T  36601937 atacgttcataaattttgttctatttcaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttcaattctctcg 36601839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 6321273 - 6321184
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    |||||||||||||||||||||||||||||||| ||||  ||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  6321273 atacgttcataaattttgttccattccaaaacatagaatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 6321184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 150 - 237
Target Start/End: Original strand, 18247552 - 18247639
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgtt 237  Q
    ||||||||||||||||||||||||||||||||||||| || | ||||||||||||||  |||||||||||||||||||||| ||||||    
T  18247552 atacgttcataaattttgttccattccaaaacctagaacaaacataacgtgcaatttcatcttcattcttcttcccatcttgattgtt 18247639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 33179799 - 33179897
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||| ||| ||||||||||||||||||| |||| |||||||||||||| || |||||||||||||||||||| ||||||||  |||||||    
T  33179799 atacgttcataaaattttttccattccaaaacctagaacacacataacgtgcaatttctttttcattcttcttcccatcttgattgttcaattctctcg 33179897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 6320369 - 6320458
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    |||||||||||||||||||||||||| |||||||| | |||| |||||||||||||| |||||||||||| |||||||||| ||||||||    
T  6320369 atacgttcataaattttgttccattctaaaacctataacacacataacgtgcaatttcttcttcattctttttcccatctttattgttca 6320458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 109 - 239
Target Start/End: Complemental strand, 21191704 - 21191580
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||| |||| ||||       |||||||||| |||||||||||||||||| | || | ||||| |||| ||| |    
T  21191704 cttgtaacaattaaaatttcacatcaaatttaacctatcaa------tcataaatttggttccattccaaaacctaaaacagacataacctgcagtttct 21191611  T
Q  209 tcttcattcttcttcccatcttaattgttca 239  Q
    |||||||||||||||||||||| ||||||||    
T  21191610 tcttcattcttcttcccatcttgattgttca 21191580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 14453130 - 14453228
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||||||||||  ||||||||  |||| || | |||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||    
T  14453130 atacgttcataaattttgttcagttccaaaatatagaacatacataacgtgcaatttcttcttcattcttcttcccatcttgattgttcaattctctcg 14453228  T

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Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 14454505 - 14454465
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14454505 cttgtaacaattaaaatttcacatcaaattcaacccatcat 14454465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 18246647 - 18246687
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18246647 cttgtaacaattaaaatttcacatcaaattcaacccatcat 18246687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 24520361 - 24520321
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24520361 cttgtaacaattaaaatttcacatcaaattcaacccatcat 24520321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 6319493 - 6319532
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatca 148  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6319493 cttgtaacaattaaaatttcacatcaaattcaacccatca 6319532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 27478997 - 27478954
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatata 152  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  27478997 cttgcaacaattaaaatttcacatcaaattcaacccatcatata 27478954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 20919802 - 20919764
Alignment:
Q  114 aacaattaaaatttcacatcaaattcaacccatcatata 152  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20919802 aacaattaaaatttcacatcaaattcaacccatcatata 20919764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 6322283 - 6322243
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  6322283 cttgtaacaattaaaatttcatatcaaattcaacccatcat 6322243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 33182712 - 33182672
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  33182712 cttgtaacaattaaaatttcacatcaaattcaatccatcat 33182672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 36600893 - 36600933
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  36600893 cttgtaacaattaaaatttcacatcaaattcaatccatcat 36600933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 14452257 - 14452296
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatca 148  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  14452257 cttgtgacaattaaaatttcacatcaaattcaacccatca 14452296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 24460658 - 24460615
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatata 152  Q
    |||| |||||||||||||||||||||||||||| ||||||||||    
T  24460658 cttgcaacaattaaaatttcacatcaaattcaatccatcatata 24460615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 33178917 - 33178957
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||||||||||||| ||||||||||||||| |||||    
T  33178917 cttgtaacaattaaaattttacatcaaattcaaccaatcat 33178957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 36602871 - 36602835
Alignment:
Q  113 taacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||| ||||||    
T  36602871 taacaattaaaatttcacatcaaattcaactcatcat 36602835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 518256 - 518291
Alignment:
Q  117 aattaaaatttcacatcaaattcaacccatcatata 152  Q
    ||||||||||||||||||||| ||||||||||||||    
T  518256 aattaaaatttcacatcaaatccaacccatcatata 518291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 38932380 - 38932341
Alignment:
Q  110 ttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  38932380 ttgtaacaattaaaattttacatcaaattgaacccatcat 38932341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 2291460 - 2291492
Alignment:
Q  107 gacttgtaacaattaaaatttcacatcaaattc 139  Q
    ||||| |||||||||||||||||||||||||||    
T  2291460 gacttataacaattaaaatttcacatcaaattc 2291492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 69686 - 69825
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||| |    
T  69686 cttgtaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaatttcgttccattccaaaacctagaacacacataacgtgcaatttct 69785  T
Q  209 tcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||||||||||| ||| ||||  |||||||    
T  69786 tcttcattcttcttcccatcttgattattcaattctctcg 69825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 70749 - 70657
Alignment:
Q  147 catatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    |||||| ||||||||||||||||  ||||||||||| ||| |||| |||||||| ||||| |||||||||||||||||||||| |||||||||    
T  70749 catatatgttcataaattttgttttattccaaaaccaagaacacacataacgtgtaatttcttcttcattcttcttcccatctaaattgttca 70657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 71695 - 71655
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  71695 cttgtaacaattaaaatttcacatcaaattcaacccatcat 71655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 1599614 - 1599753
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |    
T  1599614 cttgtaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttct 1599713  T
Q  209 tcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||||  |||||| ||||||||  |||||||    
T  1599714 tcttcattcttcttttcatcttgattgttcaattctctcg 1599753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 109 - 248
Target Start/End: Complemental strand, 38229648 - 38229509
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || | |||||||||||||| |    
T  38229648 cttgtaacaattaaaatttcacatcaaattcaacccatcatatatgttcataaattttgttccattgcaaaacctagaacatacataacgtgcaatttct 38229549  T
Q  209 tcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||||||||||| ||||||||  |||||||    
T  38229548 tcttcattcttcttcccatcttgattgttcaattctctcg 38229509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 109 - 230
Target Start/End: Complemental strand, 41408037 - 41407916
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||| ||||| ||||||||||||| |    
T  41408037 cttgtaacaattaaaatttcacatcaaattcaacccatcatatatgttcataaattttgttccattaaaaaacctagaacacatgtaacgtgcaatttct 41407938  T
Q  209 tcttcattcttcttcccatctt 230  Q
    ||||||||||||||||||||||    
T  41407937 tcttcattcttcttcccatctt 41407916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 109 - 230
Target Start/End: Complemental strand, 47254620 - 47254499
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||| |    
T  47254620 cttgtaacaattaaaatttcacatcaaattcaacgcatcatatacgttcataaattttgttacattccaaaacctagaacacacataacgtgcaatttct 47254521  T
Q  209 tcttcattcttcttcccatctt 230  Q
    |||||||| |||||||||||||    
T  47254520 tcttcatttttcttcccatctt 47254499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 43543194 - 43543333
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||  |||| |||||||||||||| |    
T  43543194 cttgtaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttcccttccaaaacctaggacacacataacgtgcaatttct 43543293  T
Q  209 tcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||||| ||| || ||||||||  |||||||    
T  43543294 tcttcattcttcttctcattttgattgttcaattctctcg 43543333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 107 - 248
Target Start/End: Complemental strand, 46160640 - 46160497
Alignment:
Q  107 gacttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaa---acctagaccacatataacgtgcaa 203  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   ||  | | |||| |||| ||||||    
T  46160640 gacttgtaacaattaaaatttcacatcaaattcaacacatcatatacgttcataaattttgttccattccaaaattactaaaaacacacataatgtgcaa 46160541  T
Q  204 ttttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||| ||||||| ||||||| ||||||| ||||||||  |||||||    
T  46160540 tttcttcttcactcttctt-ccatcttgattgttcaattctctcg 46160497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 595398 - 595311
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgtt 237  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||    
T  595398 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgtt 595311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 1600566 - 1600477
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| |||||||||| ||||||||    
T  1600566 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttattcccatcttgattgttca 1600477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 150 - 237
Target Start/End: Original strand, 38226274 - 38226361
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgtt 237  Q
    ||||||||||||||||||||||||||||||||||||| |||  |||||||||||||| ||||||||||||||| ||||||| ||||||    
T  38226274 atacgttcataaattttgttccattccaaaacctagaacacgcataacgtgcaatttcttcttcattcttctttccatcttgattgtt 38226361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 150 - 227
Target Start/End: Original strand, 33980617 - 33980694
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccat 227  Q
    ||||||||||||||||||||||||||||||||||||| | || |||||||||||||| ||||||||||||||||||||    
T  33980617 atacgttcataaattttgttccattccaaaacctagaactcacataacgtgcaatttcttcttcattcttcttcccat 33980694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 33981524 - 33981435
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||| ||||||| ||| ||||    
T  33981524 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgtaatttcttcttcattcttctttccatcttgattcttca 33981435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 585127 - 585047
Alignment:
Q  147 catatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccat 227  Q
    |||||||||||||||||||||||||||||||||||||||| || | ||||| |||||||| ||||||||||||||||||||    
T  585127 catatacgttcataaattttgttccattccaaaacctagaacatacataacatgcaatttcttcttcattcttcttcccat 585047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 46159693 - 46159781
Alignment:
Q  151 tacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    |||||||||||||||||||||||||| ||||||||| | || |||||||||||||| |||||||||||||||| |||||| ||||||||    
T  46159693 tacgttcataaattttgttccattcctaaacctagaacgcacataacgtgcaatttcttcttcattcttcttctcatcttgattgttca 46159781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 19064124 - 19064248
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    ||||||||||||||||||||||||||||||||||| ||||       ||||||||||  ||||||||||||||||| | || | ||||| |||| ||| |    
T  19064124 cttgtaacaattaaaatttcacatcaaattcaacctatcaa------tcataaatttgattccattccaaaacctaaaacagacataacctgcagtttct 19064217  T
Q  209 tcttcattcttcttcccatcttaattgttca 239  Q
    |||||||||||||||||||||| ||||||||    
T  19064218 tcttcattcttcttcccatcttgattgttca 19064248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 42832035 - 42832133
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||||||||||||||| |||| ||||| |||| |||||||||||||| ||||||||| || | |||||||| ||||||||  |||||||    
T  42832035 atacgttcataaattttgttccattctaaaatctagaacacacataacgtgcaatttcttcttcatttttttacccatcttgattgttcagttctctcg 42832133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 38224540 - 38224584
Alignment:
Q  105 aggacttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38224540 aggacttgtaacaattaaaatttcacatcaaattcaacccatcat 38224584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 43544136 - 43544080
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattt 206  Q
    ||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||    
T  43544136 atacgttcataaattttgttccattccaaaacctataacacacataacgtgcaattt 43544080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 41407823 - 41407886
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttc 213  Q
    ||||||||||| ||||||||||||||||||| ||||| |||| |||||||||||||| ||||||    
T  41407823 atacgttcatagattttgttccattccaaaatctagaacacacataacgtgcaatttcttcttc 41407886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 47253692 - 47253746
Alignment:
Q  152 acgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattt 206  Q
    ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||    
T  47253692 acgttcataaaatttgttccattccaaaacctagaacacacataacgtgcaattt 47253746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 37708234 - 37708194
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  37708234 cttgtaacaattaaaatttcacatcaaattcaacccatcat 37708194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 41406144 - 41406184
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41406144 cttgtaacaattaaaatttcacatcaaattcaacccatcat 41406184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 37624024 - 37623981
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatata 152  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  37624024 cttgcaacaattaaaatttcacatcaaattcaacccatcatata 37623981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 596253 - 596216
Alignment:
Q  105 aggacttgtaacaattaaaatttcacatcaaattcaac 142  Q
    ||||||||||||||||||||||||||||||||||||||    
T  596253 aggacttgtaacaattaaaatttcacatcaaattcaac 596216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 1602269 - 1602229
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  1602269 cttgtaacaattaaaattttacatcaaattcaacccatcat 1602229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 33982462 - 33982418
Alignment:
Q  105 aggacttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||    
T  33982462 aggacttgtaacaattaacatttcacatcaaattcaacacatcat 33982418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 42832913 - 42832853
Alignment:
Q  188 cacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||| |||||||||||||| |||||||||||||| |||||||| ||||||||  |||||||    
T  42832913 cacacataacgtgcaatttcttcttcattcttctccccatcttgattgttcaattctctcg 42832853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 43545035 - 43544999
Alignment:
Q  113 taacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||    
T  43545035 taacaattaaaatttcacatcaaattcaacccatcat 43544999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 42825812 - 42825851
Alignment:
Q  110 ttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  42825812 ttgtaacaattaaaatttcacatcaaattccacccatcat 42825851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 47252174 - 47252213
Alignment:
Q  110 ttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  47252174 ttgtaacaattaaaatttcacatcaaattctacccatcat 47252213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 42833867 - 42833827
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||| ||||||||||||||||||||||||| ||||||||||    
T  42833867 cttgaaacaattaaaatttcacatcaaatttaacccatcat 42833827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 143
Target Start/End: Complemental strand, 586028 - 585997
Alignment:
Q  112 gtaacaattaaaatttcacatcaaattcaacc 143  Q
    ||||||||||||||||||||||||||||||||    
T  586028 gtaacaattaaaatttcacatcaaattcaacc 585997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 33979571 - 33979605
Alignment:
Q  108 acttgtaacaattaaaatttcacatcaaattcaac 142  Q
    ||||| |||||||||||||||||||||||||||||    
T  33979571 acttgcaacaattaaaatttcacatcaaattcaac 33979605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 34858476 - 34858615
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||| |||| |||||||||||||| |    
T  34858476 cttgtaacaattaaaatttcacatcaaattccacccatcataaacgttcataaattttgtttcattccaaaacctagaacacacataacgtgcaatttct 34858575  T
Q  209 tcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||||||||||| ||||||||  |||||||    
T  34858576 tcttcattcttcttcccatcttgattgttcaattctctcg 34858615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 109 - 239
Target Start/End: Complemental strand, 8525666 - 8525536
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||| |    
T  8525666 cttgtaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccattccaaaacctagagtacacataacgtgcaatttct 8525567  T
Q  209 tcttcattcttcttcccatcttaattgttca 239  Q
    ||||||||||||||| |||||| ||||||||    
T  8525566 tcttcattcttcttctcatcttgattgttca 8525536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 37250376 - 37250515
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||      
T  37250376 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaacacgcataacgtgcaatttcc 37250475  T
Q  209 tcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||| |||||||||| || ||||||||  |||||||    
T  37250476 tcttcatttttcttcccattttgattgttcaattctctcg 37250515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 5100435 - 5100565
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| |||| ||||||||| |    
T  5100435 cttgtaacaattaaaatttcacatcaaattcaacgcatcatatacgttcataaattttgttacattccaaaacctagaacacacataatgtgcaatttct 5100534  T
Q  209 tcttcattcttcttcccatcttaattgttca 239  Q
    |||||||| ||||||||||||| ||||||||    
T  5100535 tcttcatttttcttcccatcttgattgttca 5100565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 29639530 - 29639660
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |    
T  29639530 cttgtaacaattaaagtttcacatcaaattcaacccatcatatacattcataaattttgttccactccaaaacctagaacacatgtaacgtgcaatttct 29639629  T
Q  209 tcttcattcttcttcccatcttaattgttca 239  Q
    |||||||||||||||||||| | ||||||||    
T  29639630 tcttcattcttcttcccatcatgattgttca 29639660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 29640326 - 29640198
Alignment:
Q  110 ttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaatttttt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||    
T  29640326 ttgtaacaattaaaatttcacatcaaattcaacccatcatatatgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttctt 29640227  T
Q  210 cttcattcttcttcccatcttaattgttca 239  Q
    |||| || ||||||||||||| ||||||||    
T  29640226 cttc-ttattcttcccatcttgattgttca 29640198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 15525199 - 15525297
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||    
T  15525199 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttcaattctctcg 15525297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 109 - 213
Target Start/End: Complemental strand, 3035783 - 3035679
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    ||||||| || ||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| | ||||||||| ||||||||| |    
T  3035783 cttgtaataactaaaatttcacatcaaattcaacacatcatatatgttcatacattttgttccattccaaaacctataacacatataatgtgcaatttct 3035684  T
Q  209 tcttc 213  Q
    |||||    
T  3035683 tcttc 3035679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 3034866 - 3034964
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||||||| ||||||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||    
T  3034866 atacgttcataaattttattccattccaaaacctaaaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttcaattctctcg 3034964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 5101319 - 5101221
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||| ||||||||||||||||| ||||| |||| |||| ||||||||| ||||||||||||||||||||||| ||||||||  |||||||    
T  5101319 atacgttcataaaatttgttccattccaaaatctagaacacacataatgtgcaatttcttcttcattcttcttcccatcttgattgttcaattctctcg 5101221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 15526111 - 15526015
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||||||||||||||||||||||||||  ||||| |||||||||||| |||||||||||||||  |||||| ||||||||  |||||||    
T  15526111 atacgttcataaattttgttccattccaaaacctaga--acatacaacgtgcaatttcttcttcattcttcttttcatcttgattgttcaattctctcg 15526015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 29390837 - 29390729
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||| |||| |||||||| || | ||||| || | ||| |    
T  29390837 cttgtaacaattaaaatttcacatcaaattcaacccat------ggttcataaattttgttccagtccataacctagaacagacataacctgtagtttct 29390744  T
Q  209 tcttcattcttcttc 223  Q
    |||||||||||||||    
T  29390743 tcttcattcttcttc 29390729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 8524723 - 8524821
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||||||||| |||||||||||||| | |||  ||||| |||||||| |||||||||||||||| |||||| | ||||||  |||||||    
T  8524723 atacgttcataaattttgtttcattccaaaacctataacacgcataacttgcaatttcttcttcattcttcttctcatcttgactgttcaattctctcg 8524821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 34859440 - 34859376
Alignment:
Q  149 tatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttc 213  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| ||||||    
T  34859440 tatacgttcataaattttgttctattccaaaacctagaacacatgtaacgtgcaatttcttcttc 34859376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 8520453 - 8520493
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  8520453 cttgtaacaattaaaattttacatcaaattcaacccatcat 8520493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 6719689 - 6719726
Alignment:
Q  115 acaattaaaatttcacatcaaattcaacccatcatata 152  Q
    |||||||||||||||||||||||| |||||||||||||    
T  6719689 acaattaaaatttcacatcaaatttaacccatcatata 6719726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 29389182 - 29389219
Alignment:
Q  110 ttgtaacaattaaaatttcacatcaaattcaacccatc 147  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  29389182 ttgtaacaattaaaatttcacatcaaattcaactcatc 29389219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 37251272 - 37251228
Alignment:
Q  193 ataacgtgcaattttttcttcattcttcttcccatcttaattgtt 237  Q
    ||||||||||| || ||||||||||||||||||||||| ||||||    
T  37251272 ataacgtgcaacttattcttcattcttcttcccatcttgattgtt 37251228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 37252582 - 37252535
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataac 197  Q
    ||||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  37252582 atacgttcataaattttgttcaatttcaaaacctagaacacacataac 37252535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 15524322 - 15524358
Alignment:
Q  113 taacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||| |||||||| |||||||    
T  15524322 taacaattaaaatttcacattaaattcaaaccatcat 15524358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 37256252 - 37256212
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||||||||||||| |||||||| ||||| ||||||    
T  37256252 cttgtaacaattaaaatttgacatcaaactcaactcatcat 37256212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 31640313 - 31640443
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||| ||||| |    
T  31640313 cttgtaaaaattaaaatttcacatcaaattcaacccatcatatacgttcatatattttgttccattccaaaacctagaacacacataacgtgtaatttct 31640412  T
Q  209 tcttcattcttcttcccatcttaattgttca 239  Q
    |||||||||||||||||||||| ||||||||    
T  31640413 tcttcattcttcttcccatcttgattgttca 31640443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 41671353 - 41671224
Alignment:
Q  110 ttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaatttttt 209  Q
    ||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||| |||||||||||||| | |||| |||||||| ||||| ||    
T  41671353 ttgtaacaattaaaatttcacatcaaattcaatgcatcatataagttcataaattttgttacattccaaaacctaaaacacacataacgtgtaatttctt 41671254  T
Q  210 cttcattcttcttcccatcttaattgttca 239  Q
    ||||||| ||||||||||||| ||||||||    
T  41671253 cttcatttttcttcccatcttgattgttca 41671224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 35021145 - 35021243
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||| ||||||||  |||||||    
T  35021145 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttctttccatcttgattgttcaattctctcg 35021243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 38363640 - 38363551
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    ||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| ||||||||||||||||||||||| ||||||||    
T  38363640 atacgttcataaattttgttccattccaaaacctagaacacacacaacgtgcaatttcttcttcattcttcttcccatcttgattgttca 38363551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 150 - 237
Target Start/End: Original strand, 41670446 - 41670533
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgtt 237  Q
    ||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||    
T  41670446 atacgttcataaaatttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgtt 41670533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 19142132 - 19142034
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||| ||||||||  |||||||    
T  19142132 atacgttcataaattttgttctattccaaaacctagaacacacataacatgcaatttattcttcattcttcttcccatcttgattgttcaattctctcg 19142034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 38362732 - 38362830
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||||||||| |||| ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||    
T  38362732 atacgttcataaattttgttgcatttcaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttcaattctctcg 38362830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 35022053 - 35021955
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| ||||| ||||||||| ||||||| ||||||||  |||||||    
T  35022053 atacgttcataaattttgttccattccaaaatctagaacacatataatgtgcaatttcttctttattcttctttccatcttgattgttcaattctctcg 35021955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 26920418 - 26920314
Alignment:
Q  144 catcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctc 243  Q
    ||||| ||||||||||||||||| ||||||||||||||||| | |||| ||||| |||||||| |||||||||||||||||||| || ||||||||  ||    
T  26920418 catcaaatacgttcataaattttattccattccaaaacctaaaacacacataacatgcaatttcttcttcattcttcttcccatattgattgttcaattc 26920319  T
Q  244 tctcg 248  Q
    |||||    
T  26920318 tctcg 26920314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 26951136 - 26951032
Alignment:
Q  144 catcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctc 243  Q
    ||||| |||| |||||||||||| ||||||||||||| ||| |  ||| |||||||||||||| ||||||||||||||||||||||| ||||||||  ||    
T  26951136 catcaaatacattcataaattttattccattccaaaatctataatacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttcaattc 26951037  T
Q  244 tctcg 248  Q
    |||||    
T  26951036 tctcg 26951032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 15825781 - 15825739
Alignment:
Q  107 gacttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15825781 gacttgtaacaattaaaatttcacatcaaattcaacccatcat 15825739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 31642892 - 31642852
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31642892 cttgtaacaattaaaatttcacatcaaattcaacccatcat 31642852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 35019443 - 35019483
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35019443 cttgtaacaattaaaatttcacatcaaattcaacccatcat 35019483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 39069038 - 39069081
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatata 152  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  39069038 cttgcaacaattaaaatttcacatcaaattcaacccatcatata 39069081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 26950253 - 26950315
Alignment:
Q  177 aaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    |||||||| | |||| ||||||||||| || ||||||||||||||||||||||| ||||||||    
T  26950253 aaaacctataacacacataacgtgcaaattcttcttcattcttcttcccatcttgattgttca 26950315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 19143065 - 19143025
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  19143065 cttgtaacaattaaaatttcacatcaaattcaacacatcat 19143025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 23625866 - 23625906
Alignment:
Q  110 ttgtaacaattaaaatttcacatcaaattcaacccatcata 150  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  23625866 ttgtaacaattaaaatttcacatcaaattcaatccatcata 23625906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 43129544 - 43129586
Alignment:
Q  107 gacttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||| ||||||||| ||||||    
T  43129544 gacttgtaacaattaaaatttcacattaaattcaactcatcat 43129586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 23625999 - 23625962
Alignment:
Q  107 gacttgtaacaattaaaatttcacatcaaattcaaccc 144  Q
    |||||||||||||||||||||||||| |||||||||||    
T  23625999 gacttgtaacaattaaaatttcacattaaattcaaccc 23625962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 31641265 - 31641173
Alignment:
Q  147 catatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctct 246  Q
    |||||||||||||||||||||||| |||||||| ||         |||||| |||||||| |||||||||||| || ||||||| ||||||||  |||||    
T  31641265 catatacgttcataaattttgttcaattccaaaccc---------tataacatgcaatttcttcttcattcttttttccatcttgattgttcaattctct 31641175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 26951161 - 26951129
Alignment:
Q  105 aggacttgtaacaattaaaatttcacatcaaat 137  Q
    |||||||||||||||||||||||||||||||||    
T  26951161 aggacttgtaacaattaaaatttcacatcaaat 26951129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 38364613 - 38364574
Alignment:
Q  110 ttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  38364613 ttgtaataattaaaatttcacatcaaattaaacccatcat 38364574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 137
Target Start/End: Complemental strand, 26920439 - 26920411
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaat 137  Q
    |||||||||||||||||||||||||||||    
T  26920439 cttgtaacaattaaaatttcacatcaaat 26920411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 29725697 - 29725737
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||| ||||||||||| |||||||||||||| ||||||    
T  29725697 cttgtaaaaattaaaattttacatcaaattcaactcatcat 29725737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 109 - 239
Target Start/End: Complemental strand, 48073813 - 48073683
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||| ||||||||| |    
T  48073813 cttgtaaaaattaaaatttcacatcaaattcaacccatcatatacgttcatatattttgttccattccaaaacctagaacacacataatgtgcaatttct 48073714  T
Q  209 tcttcattcttcttcccatcttaattgttca 239  Q
    |||||||||||||||||||||| ||||||||    
T  48073713 tcttcattcttcttcccatcttgattgttca 48073683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 109 - 248
Target Start/End: Complemental strand, 42879593 - 42879454
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| |    
T  42879593 cttgtaacaattaaaatttcacatcaaattcaactcatcatatacgttcataaattttgttccattccaaaacctaaaacacacataacgtgcaatttct 42879494  T
Q  209 tcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||||  ||||| ||||||||  |||||||    
T  42879493 tcttcattcttcttcttatcttgattgttcaattctctcg 42879454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 109 - 248
Target Start/End: Complemental strand, 39131830 - 39131691
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||| |||||||| |    
T  39131830 cttgtaacaattaaaatttcacatcaaattcaactcattatatacgttcataaattttgttccattccaaaatctagaacacacataacatgcaatttct 39131731  T
Q  209 tcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||| |||||| |||||| ||||||||  |||||||    
T  39131730 tcttcattattcttctcatcttgattgttcaattctctcg 39131691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 109 - 248
Target Start/End: Original strand, 42164161 - 42164300
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||   ||||||||||||||      
T  42164161 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgtttcattccaaaacctagaacatgcataacgtgcaatttcc 42164260  T
Q  209 tcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||| |||||| |||||| ||||||||  |||||||    
T  42164261 tcttcatttttcttctcatcttgattgttcaattctctcg 42164300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 109 - 239
Target Start/End: Complemental strand, 43862469 - 43862339
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||   ||||||||||||||      
T  43862469 cttgtaacaattaaaatttcacatcaaattcaacccatcatatactttcataaattttgttccattccaaaacctagaacatgcataacgtgcaatttcc 43862370  T
Q  209 tcttcattcttcttcccatcttaattgttca 239  Q
    |||||||| ||||||| ||||| ||||||||    
T  43862369 tcttcatttttcttcctatcttgattgttca 43862339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 43861547 - 43861645
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||||||||| ||||||||  |||||||    
T  43861547 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgaaatttcttcttcattcttcttcccatcttgattgttcaattctctcg 43861645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 50937506 - 50937408
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||| |||||| ||||||||  |||||||    
T  50937506 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttctcatcttgattgttcaattctctcg 50937408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 39130891 - 39130978
Alignment:
Q  152 acgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    |||||||||||||||||||||||||||| |||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  39130891 acgttcataaattttgttccattccaaatcctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 39130978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 239
Target Start/End: Original strand, 36465829 - 36465962
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat----atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaat 204  Q
    |||| |||| || ||||||||||||||||||| ||||||||    |||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||    
T  36465829 cttgaaacacttgaaatttcacatcaaattcatcccatcattcatatacgttcataaattttgttccattcaaaaacctagaacacacataacctgcaat 36465928  T
Q  205 tttttcttcattcttcttcccatcttaattgttca 239  Q
    || ||||||| |||||||||||| || ||||||||    
T  36465929 ttcttcttca-tcttcttcccatgttgattgttca 36465962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 42878649 - 42878738
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| ||||| ||||||||||||||||| ||||||||    
T  42878649 atacgttcataaattttgttccattccaaaacctagaacacacataaagtgcaatttcttcttgattcttcttcccatcttgattgttca 42878738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 22978865 - 22978963
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||||||||||||||  |||||||||| || |||||||||||||||| |||||||||||||||| |||||| ||||||||  |||||||    
T  22978865 atacgttcataaattttgttccatttaaaaacctagaacatatataacgtgcaatttcttcttcattcttcttctcatcttgattgttcaattctctcg 22978963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 43358581 - 43358488
Alignment:
Q  147 catatacgttcataaattttgttccatt-ccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    |||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||| | |||||||||| |||||||||| ||||||||    
T  43358581 catatacgttcataaattttgttccatttccaaaacctagaacacacataacgtgcaatttctacttcattctttttcccatcttgattgttca 43358488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 2228473 - 2228375
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||||||||| ||||||||||| |||| |||| |||||||||||||| || ||||||||| |||||||||| ||||||||  |||||||    
T  2228473 atacgttcataaattttgtttcattccaaaacttagaacacacataacgtgcaatttctttttcattctttttcccatcttgattgttcaattctctcg 2228375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 50936601 - 50936699
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||||||||||||||||||||||||||| |||| | |||||| ||||| |||||||||||| ||| |||||| ||||||||  |||||||    
T  50936601 atacgttcataaattttgttccattccaaaacctagaacacacacaacgtgaaatttcttcttcattctttttctcatcttgattgttcaattctctcg 50936699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 22979773 - 22979684
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    ||||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||| ||||||||| ||||| ||||||| ||||||||    
T  22979773 atacgttcataaattttgttccattccaaaaactagaacacacataacgtgaaatttcttcttcattattcttgccatcttgattgttca 22979684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 48072877 - 48072978
Alignment:
Q  147 catatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctct 246  Q
    |||| ||||||||||||||||||| |||||||| |||||| |||| |||||||||||||| |||||||||||| || ||||||| ||||||||  |||||    
T  48072877 catacacgttcataaattttgttcaattccaaaccctagaacacacataacgtgcaatttcttcttcattcttttttccatcttgattgttcaattctct 48072976  T
Q  247 cg 248  Q
    ||    
T  48072977 cg 48072978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 42165097 - 42165008
Alignment:
Q  159 taaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||| || |||||||||||||||| |||| |||||||||||||| |||||||||||||||||| |||| ||||||||  |||||||    
T  42165097 taaattttatttcattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccttcttgattgttcaattctctcg 42165008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 7042568 - 7042654
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    |||||||||||||||||||||||||| |||||| ||| |    |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  7042568 atacgttcataaattttgttccattctaaaacccagaac---cataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 7042654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 109 - 239
Target Start/End: Complemental strand, 36471683 - 36471561
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||| |||  || ||  ||||||||||||||||||||||||||||||||||| || | | |     |||||| |    
T  36471683 cttgtaacaattaaaatttcacatcaaatttaac--at-atgcacgttcataaattttgttccattccaaaacctagaacagacaca-----caatttct 36471592  T
Q  209 tcttcattcttcttcccatcttaattgttca 239  Q
    |||| ||||||||||||||||| ||||||||    
T  36471591 tcttaattcttcttcccatcttgattgttca 36471561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 41889564 - 41889524
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  41889564 cttgtaacaattaaaatttcacatcaaattcaacccatcat 41889524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 42167475 - 42167435
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42167475 cttgtaacaattaaaatttcacatcaaattcaacccatcat 42167435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 42877196 - 42877236
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42877196 cttgtaacaattaaaatttcacatcaaattcaacccatcat 42877236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 50938380 - 50938340
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  50938380 cttgtaacaattaaaatttcacatcaaattcaacccatcat 50938340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 22978032 - 22978075
Alignment:
Q  107 gacttgtaacaattaaaatttcacatcaaattcaacccatcata 150  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  22978032 gacttgtaacaattaaaatttcacatcaaattcaacccagcata 22978075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 32001088 - 32001045
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatata 152  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  32001088 cttgcaacaattaaaatttcacatcaaattcaacccatcatata 32001045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 55136492 - 55136449
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatata 152  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  55136492 cttgcaacaattaaaatttcacatcaaattcaacccatcatata 55136449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 2229313 - 2229273
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  2229313 cttgtaacaattaaaatttcacatcaaattcaactcatcat 2229273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 43359425 - 43359385
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  43359425 cttgtaacaattaaaatttcacaccaaattcaacccatcat 43359385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 43860682 - 43860722
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  43860682 cttgtaataattaaaatttcacatcaaattcaacccatcat 43860722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 48071932 - 48071972
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  48071932 cttgtaacagttaaaatttcacatcaaattcaacccatcat 48071972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 41888765 - 41888803
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatc 147  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  41888765 cttgtaacaattaaaatttcacatcaaattcaactcatc 41888803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 39129256 - 39129296
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  39129256 cttgtaacaattaaaattttgcatcaaattcaacccatcat 39129296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 150
Target Start/End: Original strand, 7041694 - 7041727
Alignment:
Q  117 aattaaaatttcacatcaaattcaacccatcata 150  Q
    |||||||||||||||||||||||||| |||||||    
T  7041694 aattaaaatttcacatcaaattcaactcatcata 7041727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 109 - 248
Target Start/End: Complemental strand, 23260914 - 23260777
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttt 208  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  | |||| |||||||| ||||| |    
T  23260914 cttgtaacaattaaaatttcacatcaaattcaacgcatcatatatgttcataaattttgttccattccaaaacct--aacacacataacgtgtaatttct 23260817  T
Q  209 tcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||| ||||||||||||||| ||||||||  |||||||    
T  23260816 tcttcactcttcttcccatcttgattgttcaattctctcg 23260777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 23260104 - 23260205
Alignment:
Q  147 catatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctct 246  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||| ||||||| ||| ||||  |||||    
T  23260104 catatacgttcataaattttgttccattccaaaacctagaacacacataacatgcaatttcttcttcattcttctttccatcttgatttttcaattctct 23260203  T
Q  247 cg 248  Q
    ||    
T  23260204 cg 23260205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 4639228 - 4639311
Alignment:
Q  156 tcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    ||||||||||| |||||||| |||||||||| |||| ||||| | |||||| ||||||||||||||||||||||| ||||||||    
T  4639228 tcataaattttcttccattctaaaacctagaacacacataacatacaatttcttcttcattcttcttcccatcttgattgttca 4639311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 4640236 - 4640196
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4640236 cttgtaacaattaaaatttcacatcaaattcaacccatcat 4640196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 43847572 - 43847532
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43847572 cttgtaacaattaaaatttcacatcaaattcaacccatcat 43847532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 44110075 - 44110035
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44110075 cttgtaacaattaaaatttcacatcaaattcaacccatcat 44110035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 44299270 - 44299314
Alignment:
Q  105 aggacttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||| || |||||||    
T  44299270 aggacttgtaacaattaaaatttcacatcaaatttaatccatcat 44299314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 44300087 - 44300047
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  44300087 cttgtaacaattaaaatttcacatcaaattcaactcatcat 44300047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 11757014 - 11756975
Alignment:
Q  110 ttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  11757014 ttgtaacaattaaaatttcacatcacattcaacccatcat 11756975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 23259039 - 23259081
Alignment:
Q  107 gacttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||||||||||||||| ||||| |||||||||||||||    
T  23259039 gacttgtaacaattaaaattttacatcgaattcaacccatcat 23259081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 4638354 - 4638390
Alignment:
Q  114 aacaattaaaatttcacatcaaattcaacccatcata 150  Q
    ||||||||||||||||||||||||||||| |||||||    
T  4638354 aacaattaaaatttcacatcaaattcaactcatcata 4638390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 141
Target Start/End: Original strand, 42159569 - 42159600
Alignment:
Q  110 ttgtaacaattaaaatttcacatcaaattcaa 141  Q
    ||||||||||||||||||||||||||||||||    
T  42159569 ttgtaacaattaaaatttcacatcaaattcaa 42159600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 931 - 854
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctaga 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  931 cttgtaacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctaga 854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 20408 - 20310
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||    
T  20408 atacgttcataaattttgttccattccaaaacctagaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttcaattctctcg 20310  T

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Target: scaffold0217; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 19541 - 19596
Alignment:
Q  193 ataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    ||||||||||||||  |||||||| ||||||||||||| ||||||||  |||||||    
T  19541 ataacgtgcaatttcctcttcatttttcttcccatcttgattgttcaattctctcg 19596  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 13869105 - 13868996
Alignment:
Q  113 taacaattaaaatttcacatcaaattcaacccatcatatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttctt 212  Q
    ||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||||    
T  13869105 taacaataaaaatttcacatcaaattcaactcaccatatacgctcataaattttgttccattccaaaacctagaacacacataacatgcaatttcttctt 13869006  T
Q  213 cattcttctt 222  Q
    ||||||||||    
T  13869005 cattcttctt 13868996  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 13868184 - 13868273
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    ||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  13868184 atacgttcataaattttgttccattccaaaacctaaaacacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 13868273  T

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Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 24160173 - 24160273
Alignment:
Q  147 catatacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctct 246  Q
    ||||||||||||||||||||||||| |||||||| ||||| |||| |||||||| ||||| |||||||||||||||| |||||| ||||||||| |||||    
T  24160173 catatacgttcataaattttgttcccttccaaaatctagaacacacataacgtgaaatttattcttcattcttcttctcatcttgattgttcatttctct 24160272  T
Q  247 c 247  Q
    |    
T  24160273 c 24160273  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 15509070 - 15509159
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    ||||||| ||||||||||||||||||||||||||||| |||| || || | |||||| ||||||  ||||||||| ||||| ||||||||    
T  15509070 atacgttaataaattttgttccattccaaaacctagaacacacatgacattcaatttcttcttcggtcttcttcctatcttgattgttca 15509159  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 5090227 - 5090187
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5090227 cttgtaacaattaaaatttcacatcaaattcaacccatcat 5090187  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 32561652 - 32561561
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttcattcttcttcccatcttaattgttcatctctctcg 248  Q
    |||||||||||||||||||  |||||||||||||| |       ||||||||||||| ||||||||||||||||| ||||| ||||||||  |||||||    
T  32561652 atacgttcataaattttgtgtcattccaaaacctaaa-------taacgtgcaatttcttcttcattcttcttccgatcttgattgttcaattctctcg 32561561  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 12503661 - 12503712
Alignment:
Q  188 cacatataacgtgcaattttttcttcattcttcttcccatcttaattgttca 239  Q
    |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  12503661 cacacataacgtgcaatttcttcttcattcttcttcccatcttgattgttca 12503712  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 34574738 - 34574698
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  34574738 cttgtaaaaattaaaatttcacatcaaattcaacccatcat 34574698  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 148
Target Start/End: Original strand, 15508305 - 15508344
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatca 148  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  15508305 cttgtaacaattaaaatttcacattaaattcaacccatca 15508344  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 213
Target Start/End: Original strand, 32560768 - 32560831
Alignment:
Q  150 atacgttcataaattttgttccattccaaaacctagaccacatataacgtgcaattttttcttc 213  Q
    |||| ||||||| |||||||||||||||||||||||| |||| ||||| | |||||| ||||||    
T  32560768 atacattcataatttttgttccattccaaaacctagagcacacataacatacaatttcttcttc 32560831  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 13866220 - 13866260
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  13866220 cttgtaacaattaaaattttacatcaaactcaacccatcat 13866260  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 24159194 - 24159234
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||||||||||||| |||||||||||||| ||||||    
T  24159194 cttgtaacaattaaaattttacatcaaattcaactcatcat 24159234  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 32562550 - 32562514
Alignment:
Q  113 taacaattaaaatttcacatcaaattcaacccatcat 149  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  32562550 taacaattaaaatttgacatcaaattcaatccatcat 32562514  T

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Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 94547 - 94507
Alignment:
Q  109 cttgtaacaattaaaatttcacatcaaattcaacccatcat 149  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  94547 cttgtaacaattaaaatttcacatcaaattcaacccatcat 94507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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