View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6213_high_17 (Length: 249)
Name: NF6213_high_17
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6213_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 41782056 - 41781826
Alignment:
| Q |
1 |
ccatggtctcatgaagaacttcaacatgcatgtcacattcacacttttatgtaaattaacatattaacattgcgatgactttgtattcgaatttttattt |
100 |
Q |
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| T |
41782056 |
ccatggtctcatgaagaacttcaacatg----tcacattcacacttttatgtaaattaacatattaacattgcgatgactttgtattcgaatttttattt |
41781961 |
T |
|
| Q |
101 |
tcatattagcctcttgcattgttagttttagcaattaagaggctagnnnnnnnnnnnnnnntttagagttcaaaactaatatcaataactgatatgaann |
200 |
Q |
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| T |
41781960 |
tcatattagcctcttgcattgttagttttaacaattaagaggctagaaaaaagtcaaaaaatttagagttcaaaactaatatcaataaatgatatgaatt |
41781861 |
T |
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| Q |
201 |
nnnnngagaactagagagatttcatactcaaataa |
235 |
Q |
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||||||||||||||| || ||||||||||| |
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| T |
41781860 |
tttttgagaactagagagatatcttactcaaataa |
41781826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 40519588 - 40519787
Alignment:
| Q |
1 |
ccatggtctcatgaagaacttcaacatgcatgtcacattcacacttttatgtaaattaacat----attaacattgcgatgactttgtattcgaattttt |
96 |
Q |
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||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||| | |||||| |
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| T |
40519588 |
ccatggtctcatgaacaacttcaacatg----tcacattcacacttttatgtaaattaacatattaattaacattgtgatgactttgtattgggattttt |
40519683 |
T |
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| Q |
97 |
attt---tcatattagcctcttgcattgttagttttagcaattaagaggctagnnnnnnnnnnnnnnntttagagttcaaaactaatatcaataactgat |
193 |
Q |
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| T |
40519684 |
ttttttgttatattatcctc-tgcattgttagttttaacaattaagaggctagaaaaaagttaaaatttttagagctcaaaactaatatcaataactgat |
40519782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 40510645 - 40510685
Alignment:
| Q |
32 |
gtcacattcacacttttatgtaaattaacatattaacattg |
72 |
Q |
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| T |
40510645 |
gtcacattcacacttttatgtaatttaacacattaacattg |
40510685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 18163625 - 18163764
Alignment:
| Q |
2 |
catggtctcatgaagaacttcaacatgcatgtcacattcacacttttatgtaaattaacatattaacattgcgatgactttgtattcgaatttttatttt |
101 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || | | |||| | || |
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| T |
18163625 |
catggtctcatgaacaacttcaacatg----tcacattcacacttttatgtaaattaacatattaacattttgatgactttgttttaggacttttttgtt |
18163720 |
T |
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| Q |
102 |
catattagcctcttgcattgttagttttagcaattaagaggctag |
146 |
Q |
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| T |
18163721 |
catattagcctc-tgcattgttagttttaacaactaagaggctag |
18163764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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