View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6213_high_19 (Length: 248)

Name: NF6213_high_19
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6213_high_19
NF6213_high_19
[»] chr3 (1 HSPs)
chr3 (1-241)||(25159086-25159324)
[»] chr7 (2 HSPs)
chr7 (1-44)||(1853355-1853398)
chr7 (1-44)||(42957424-42957467)
[»] chr5 (1 HSPs)
chr5 (1-44)||(20355271-20355314)
[»] chr4 (1 HSPs)
chr4 (1-44)||(5283857-5283900)
[»] chr1 (1 HSPs)
chr1 (1-44)||(5469549-5469592)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 25159086 - 25159324
Alignment:
Q  1 caaaatcaaaaaatattcaaattacaagattagaatctaaacaannnnnnnnnacagagataaattggaaatcgctaatattacaagataaacatatact 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||         |||||||||||| ||||||||||||||||||| ||||||||||||||    
T  25159086 caaaatcaaaaaatattcaaattacaaggttagaatctaaacaatttttttttacagagataaatcggaaatcgctaatattacaggataaacatatact 25159185  T
Q  101 aacccttataatttataaaaaccaaatccggaggttttgccactatgtcttgttatcccnnnnnnncaactctttccttccatttatgtaactaatccaa 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||       ||||||||||||||||||||||||||||||||||    
T  25159186 gacccttataatttataaaaaccaaatccggaggttttgccactatgtct--ttatcccaaaaaaacaactctttccttccatttatgtaactaatccaa 25159283  T
Q  201 acaatgaaaagtgaattttcaactaccttctatttcttctc 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25159284 acaatgaaaagtgaattttcaactaccttctatttcttctc 25159324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1853355 - 1853398
Alignment:
Q  1 caaaatcaaaaaatattcaaattacaagattagaatctaaacaa 44  Q
    |||||||||||||| ||||||||||||| || ||||||||||||    
T  1853355 caaaatcaaaaaatcttcaaattacaaggttggaatctaaacaa 1853398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 42957467 - 42957424
Alignment:
Q  1 caaaatcaaaaaatattcaaattacaagattagaatctaaacaa 44  Q
    ||||||||||||| |||||||||||| | |||||||||||||||    
T  42957467 caaaatcaaaaaaaattcaaattacagggttagaatctaaacaa 42957424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 20355271 - 20355314
Alignment:
Q  1 caaaatcaaaaaatattcaaattacaagattagaatctaaacaa 44  Q
    |||||||||||||| ||||||||||| |||| ||||||||||||    
T  20355271 caaaatcaaaaaatcttcaaattacaggattggaatctaaacaa 20355314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5283857 - 5283900
Alignment:
Q  1 caaaatcaaaaaatattcaaattacaagattagaatctaaacaa 44  Q
    |||||||||||||| ||||||||||| |||| ||||||||||||    
T  5283857 caaaatcaaaaaatcttcaaattacaggattggaatctaaacaa 5283900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5469549 - 5469592
Alignment:
Q  1 caaaatcaaaaaatattcaaattacaagattagaatctaaacaa 44  Q
    ||||||||||||| |||||||||||||| || ||||||||||||    
T  5469549 caaaatcaaaaaaaattcaaattacaaggttggaatctaaacaa 5469592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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