View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6213_high_27 (Length: 228)
Name: NF6213_high_27
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6213_high_27 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 43750641 - 43750863
Alignment:
| Q |
6 |
atttgctacacattattctatagatcatggacacatgctgatgtttcaatatgaaaaaacatctcattttaagatttacatatttaacaagagtactttg |
105 |
Q |
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| T |
43750641 |
atttgctacacattattctatagatcatggacacatgctgatgtttcaatatgaaaaaacatctcattttaagatttacatatttaacaagagtactttg |
43750740 |
T |
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| Q |
106 |
gaaattgaatatcacgttgatggaaataatcaacatgagcagaacaacctcgttgaaaatttggatgaaaaacctacatgcaagaagactagaccaaaat |
205 |
Q |
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| T |
43750741 |
gaaattgaatatcacgttgatggaaataatcaacatgagcagaacaacctcgttgaaaatttggatgaaaaacctacatgcaagaagactagaccaaaat |
43750840 |
T |
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| Q |
206 |
cacaaatttcaagtcttcaacca |
228 |
Q |
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| T |
43750841 |
cacaaatttcaagtcttcaacca |
43750863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 49164175 - 49164397
Alignment:
| Q |
6 |
atttgctacacattattctatagatcatggacacatgctgatgtttcaatatgaaaaaacatctcattttaagatttacatatttaacaagagtactttg |
105 |
Q |
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| T |
49164175 |
atttgctacacattattcattagatcatggtcacatggtgctgtttcaatatcagaaaacctctcattttgaggtttacatttttgacaagagtactttt |
49164274 |
T |
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| Q |
106 |
gaaattgaatatcacgttgatggaaataatcaacatgagcagaacaacctcgttgaaaatttggatgaaaaacctacatgcaagaagactagaccaaaat |
205 |
Q |
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| T |
49164275 |
gaaatcgaatatcgtgttgatggtaataatcaacatgaacagagcaatccaattgaaattttggatgagcaaccttcttacaagaagagtagaccaaaat |
49164374 |
T |
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| Q |
206 |
cacaaatttcaagtcttcaacca |
228 |
Q |
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| T |
49164375 |
cacaaatttcaagttctcaacca |
49164397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 12880803 - 12880916
Alignment:
| Q |
6 |
atttgctacacattattctatagatcatggacacatgctgatgtttcaatatgaaaaaacatctcattttaagatttacatatttaacaagagtactttg |
105 |
Q |
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| T |
12880803 |
atttgctacacgttattcattagaccatggacacatgacggtgtttcaatataaaaaaatatcacattttgaggtttacatattttaccagagtactttt |
12880902 |
T |
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| Q |
106 |
gaaattgaatatca |
119 |
Q |
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| T |
12880903 |
gaaattgaatatca |
12880916 |
T |
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