View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6213_high_28 (Length: 212)
Name: NF6213_high_28
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6213_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 867572 - 867752
Alignment:
| Q |
18 |
caaacagttcggtttggttcaattttcatccggaaccaaactatgccgacccctatataaaagtcccgtgtaggtagctcagttggtgagctaagggaca |
117 |
Q |
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| T |
867572 |
caaacagttcggtttggttcaattttcatccggaaccaaactatgcccacccctatataaaagttccgtgtaggtagctcagttggtgagctaagggaca |
867671 |
T |
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| Q |
118 |
ttaaactaggaggtctcgggtttctctccggaaactaacatagctactaacatttcaaaataacagtcatcttgctctctg |
198 |
Q |
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| T |
867672 |
ttaaactaggaggtgtcgggtttatctccggaaactaacatagctactaacatttcaaaataacagtcatcttgctctctg |
867752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 49515274 - 49515304
Alignment:
| Q |
88 |
taggtagctcagttggtgagctaagggacat |
118 |
Q |
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| T |
49515274 |
taggtagctcagttggtgagctaagggacat |
49515304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 37097864 - 37097903
Alignment:
| Q |
80 |
gtcccgtgtaggtagctcagttggtgagctaagggacatt |
119 |
Q |
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| T |
37097864 |
gtcccgtgtaggtagctcggttggtgagctaagggacatt |
37097903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 115
Target Start/End: Complemental strand, 37423145 - 37423110
Alignment:
| Q |
80 |
gtcccgtgtaggtagctcagttggtgagctaaggga |
115 |
Q |
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| T |
37423145 |
gtcccgcgtaggtagctcagttggtgagctaaggga |
37423110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 117
Target Start/End: Original strand, 22550589 - 22550619
Alignment:
| Q |
87 |
gtaggtagctcagttggtgagctaagggaca |
117 |
Q |
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| T |
22550589 |
gtaggtagctcagttggtgagctaagggaca |
22550619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 37255618 - 37255668
Alignment:
| Q |
22 |
cagttcggtttggttcaattttcatccggaaccaaactatgccgaccccta |
72 |
Q |
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| T |
37255618 |
cagttcggttccgttcaattttcatcctgaaccaaactatgtccaccccta |
37255668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 20619738 - 20619774
Alignment:
| Q |
80 |
gtcccgtgtaggtagctcagttggtgagctaagggac |
116 |
Q |
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| T |
20619738 |
gtcccgtgtaggcagctcggttggtgagctaagggac |
20619774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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