View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6213_high_3 (Length: 455)
Name: NF6213_high_3
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6213_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 104 - 388
Target Start/End: Original strand, 9355156 - 9355440
Alignment:
| Q |
104 |
tcttggaaatttttaagggaggacatattaatggtagaaggtcagtaaaagcgggatgacaattttatttccaggaaaatctcaacagtatgctataatg |
203 |
Q |
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| T |
9355156 |
tcttggaaatttttaagggaggacatattaatggtagaaggtcagtaaaaacgggatgacaattttatttctaggaaaatctcaacagtatgctataatg |
9355255 |
T |
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| Q |
204 |
gcagagcagccacttggcgctacatctacagaacttccacgcgccacgttttccaactacagcagtctggtgctattgctgccactataatggaagatta |
303 |
Q |
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| T |
9355256 |
gcagagcagccacttgccgctacatctacagaacttccacgcgccacgttttccaactacagtaatctggtgctattgctgccactataatggaagatta |
9355355 |
T |
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| Q |
304 |
tggctgttgcatattgtcacaaagcccatctttaccctgttcctccccacaaatgactatgatggcttctgcttcaattaaaatg |
388 |
Q |
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| T |
9355356 |
tggctgttgcatattgtcacaaagcccatctttaccccgttcctccccacaaatgactatgatggcttttgcttcaattaaaatg |
9355440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 108 - 388
Target Start/End: Original strand, 9345765 - 9346030
Alignment:
| Q |
108 |
ggaaatttttaagggaggacatattaatggtagaaggtcagtaaaagcgggatgacaattttatttccaggaaaatctcaacagtatgctataatggcag |
207 |
Q |
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| T |
9345765 |
ggaaatttttaagggaggacatattaatggtagaaggt---------------gacaattttatttccaggaaaatctcaacagtatgctataatggcag |
9345849 |
T |
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| Q |
208 |
agcagccacttggcgctacatctacagaacttccacgcgccacgttttccaactacagcagtctggtgctattgctgccactataatggaagattatggc |
307 |
Q |
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| T |
9345850 |
agcagccacttgccgctacatctacagaacttccacgcgccacgttttccaactacagtaatctggtgctattgctgccactataatggaagattatggc |
9345949 |
T |
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| Q |
308 |
tgttgcatattgtcacaaagcccatctttaccctgttcctccccacaaatgactatgatggcttctgcttcaattaaaatg |
388 |
Q |
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| T |
9345950 |
tgttgagtattgtcacaaagcccatctttaccccgttcctccccacaaatgactatgatggcttttgcttcaattaaaatg |
9346030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 9345726 - 9345771
Alignment:
| Q |
16 |
caggatgtgggattgagactgaattgatgtaaacaggaaggaaatt |
61 |
Q |
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| T |
9345726 |
caggatgtgggattgagattgaattgatgtaaacaggaaggaaatt |
9345771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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