View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6213_high_5 (Length: 397)

Name: NF6213_high_5
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6213_high_5
NF6213_high_5
[»] chr2 (15 HSPs)
chr2 (196-346)||(6538762-6538911)
chr2 (18-169)||(11329895-11330037)
chr2 (273-353)||(7174340-7174420)
chr2 (275-344)||(7156168-7156237)
chr2 (275-348)||(7168662-7168735)
chr2 (275-337)||(7160737-7160799)
chr2 (133-175)||(7160905-7160947)
chr2 (279-355)||(7199943-7200019)
chr2 (275-331)||(11237699-11237755)
chr2 (134-170)||(7200131-7200167)
chr2 (18-57)||(11237415-11237454)
chr2 (279-322)||(36577376-36577419)
chr2 (135-195)||(7174501-7174561)
chr2 (279-331)||(33020323-33020375)
chr2 (279-331)||(34560906-34560958)
[»] chr7 (4 HSPs)
chr7 (96-330)||(24723175-24723415)
chr7 (279-321)||(3927069-3927111)
chr7 (279-321)||(1078159-1078201)
chr7 (275-319)||(1421170-1421214)
[»] chr4 (2 HSPs)
chr4 (272-322)||(55419785-55419835)
chr4 (281-321)||(22672126-22672166)
[»] chr3 (28 HSPs)
chr3 (279-321)||(2442049-2442091)
chr3 (275-321)||(4142133-4142179)
chr3 (275-321)||(4157943-4157989)
chr3 (279-343)||(3754610-3754674)
chr3 (275-331)||(23197018-23197074)
chr3 (279-320)||(2456259-2456300)
chr3 (279-320)||(2644362-2644403)
chr3 (279-320)||(2659152-2659193)
chr3 (279-331)||(2492092-2492144)
chr3 (279-331)||(7324420-7324472)
chr3 (281-320)||(746383-746422)
chr3 (279-322)||(2459285-2459328)
chr3 (281-328)||(7398171-7398218)
chr3 (279-318)||(9608346-9608385)
chr3 (279-318)||(13498234-13498273)
chr3 (279-321)||(2696731-2696773)
chr3 (281-331)||(7442966-7443016)
chr3 (279-320)||(754609-754650)
chr3 (279-320)||(771499-771540)
chr3 (279-320)||(1438005-1438046)
chr3 (279-320)||(1891064-1891105)
chr3 (279-320)||(2631367-2631408)
chr3 (280-321)||(7432053-7432094)
chr3 (279-320)||(7942495-7942536)
chr3 (279-331)||(768318-768370)
chr3 (281-321)||(989408-989448)
chr3 (275-331)||(23230971-23231027)
chr3 (275-331)||(23234855-23234911)
[»] chr5 (6 HSPs)
chr5 (279-322)||(11081823-11081866)
chr5 (279-321)||(23766861-23766903)
chr5 (279-321)||(23816709-23816751)
chr5 (273-318)||(20305860-20305905)
chr5 (273-318)||(20310264-20310309)
chr5 (275-319)||(3181723-3181767)
[»] scaffold0015 (2 HSPs)
scaffold0015 (275-331)||(32318-32374)
scaffold0015 (275-331)||(40370-40426)
[»] chr6 (14 HSPs)
chr6 (275-321)||(176340-176386)
chr6 (279-321)||(370784-370826)
chr6 (279-321)||(1442107-1442149)
chr6 (281-331)||(19119075-19119125)
chr6 (281-331)||(19126369-19126419)
chr6 (275-331)||(17368372-17368428)
chr6 (279-322)||(1470921-1470964)
chr6 (279-330)||(7564741-7564792)
chr6 (275-318)||(9703888-9703931)
chr6 (275-318)||(9819831-9819874)
chr6 (272-321)||(1453839-1453888)
chr6 (272-321)||(1465531-1465580)
chr6 (279-320)||(24417486-24417527)
chr6 (275-331)||(17362083-17362139)
[»] scaffold0044 (1 HSPs)
scaffold0044 (279-320)||(89153-89194)
[»] chr1 (2 HSPs)
chr1 (275-331)||(23896126-23896182)
chr1 (281-341)||(51858618-51858678)


Alignment Details
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 196 - 346
Target Start/End: Original strand, 6538762 - 6538911
Alignment:
Q  196 tgtggtaagtaaatccttatgggtgctgagagattgcctctgcatactttcttttcataccgacgcttattcagaaatctggcttatgaaggagtatgga 295  Q
    |||| ||| |||||||||||||||||||||||||||  | ||||||||||||| ||||||  ||||| ||||||||||||| ||||||||||||||||||    
T  6538762 tgtgttaactaaatccttatgggtgctgagagattgattgtgcatactttcttatcatact-acgctcattcagaaatctgacttatgaaggagtatgga 6538860  T
Q  296 aataaagattcttggactaaattgtttcgtgttcctcgcatgggagatgtt 346  Q
    ||||||||||||||||||||||||||  ||||| ||  |||||||| ||||    
T  6538861 aataaagattcttggactaaattgttcagtgtttctaacatgggaggtgtt 6538911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 11329895 - 11330037
Alignment:
Q  18 atactatgggtaccaatttttggagaaggattcaggatttccctaccatttatgctattcaatcaggacaattccttagtggaactcttaattggttgcc 117  Q
    |||||||||||||||||||||||| ||||||||||||||| |||  ||   |||      |||||||| ||||| ||| ||||||||||||||||||| |    
T  11329895 atactatgggtaccaatttttggacaaggattcaggattttcct--cagc-atg------aatcaggaaaattcattaatggaactcttaattggttggc 11329985  T
Q  118 atataatcattcaagtattgtttctcttgatttggagaaagagtcttatcga 169  Q
    || |||| |||||| ||||||||| |||||||||||||| | ||||||||||    
T  11329986 atgtaataattcaactattgtttcacttgatttggagaaggggtcttatcga 11330037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 273 - 353
Target Start/End: Complemental strand, 7174420 - 7174340
Alignment:
Q  273 tctggcttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcctcgcatgggagatgttggttctg 353  Q
    |||||||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||  |||||||| |||||||||||    
T  7174420 tctggcttatgaaggaatatggaaatcaagattcttggactagattgttccgtgttccttacatgggaggtgttggttctg 7174340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 7156237 - 7156168
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcctcgcatgggagatg 344  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||  |||||||||||    
T  7156237 tggcttatgaaggagtatggaaatgaagattcttgggctaaattgttccgtgttccttacatgggagatg 7156168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 275 - 348
Target Start/End: Complemental strand, 7168735 - 7168662
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcctcgcatgggagatgttgg 348  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||  |||||||||||||||    
T  7168735 tggcttatgaaggaatatggaaataacgattcttggactaaattgttccgagttccttacatgggagatgttgg 7168662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 7160799 - 7160737
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcctcgcatg 337  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||| ||||    
T  7160799 tggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtcttcctcacatg 7160737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 7160947 - 7160905
Alignment:
Q  133 tattgtttctcttgatttggagaaagagtcttatcgagagcta 175  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  7160947 tattgtttctcttgatttggagaaggagtcttatcgagagcta 7160905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 355
Target Start/End: Complemental strand, 7200019 - 7199943
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcctcgcatgggagatgttggttctggt 355  Q
    |||||||||||| ||||||| || |||||||| ||| |||||| |||||||||  ||||| || |||||||||||||    
T  7200019 ttatgaaggagtttggaaatgaaaattcttgggctagattgttccgtgttccttacatggaaggtgttggttctggt 7199943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 11237699 - 11237755
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcct 331  Q
    ||||||||| ||||||||||||||| |||  |||||||||||||||| |||||||||    
T  11237699 tggcttatggaggagtatggaaatagagaaacttggactaaattgttccgtgttcct 11237755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 7200167 - 7200131
Alignment:
Q  134 attgtttctcttgatttggagaaagagtcttatcgag 170  Q
    ||||||||||||||||||||||| |||||||||||||    
T  7200167 attgtttctcttgatttggagaatgagtcttatcgag 7200131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 11237415 - 11237454
Alignment:
Q  18 atactatgggtaccaatttttggagaaggattcaggattt 57  Q
    ||||| |||||||||||||||||||||||||||| |||||    
T  11237415 atactttgggtaccaatttttggagaaggattcatgattt 11237454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 322
Target Start/End: Original strand, 36577376 - 36577419
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgttt 322  Q
    |||||||||| |||||||||||||| ||||||| ||||||||||    
T  36577376 ttatgaaggaatatggaaataaagagtcttggattaaattgttt 36577419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 7174561 - 7174501
Alignment:
Q  135 ttgtttctcttgatttggagaaagagtcttatcgagagctacagctgcctgattatgtatc 195  Q
    ||||||||||| |||||||||| ||||||||| ||||| ||  || ||||||||||| |||    
T  7174561 ttgtttctcttcatttggagaatgagtcttatggagagatattgcagcctgattatggatc 7174501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 33020323 - 33020375
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcct 331  Q
    |||||||||| |||||||||||| | |||||||||| |||||  |||||||||    
T  33020323 ttatgaaggaatatggaaataaaaagtcttggactagattgtaccgtgttcct 33020375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 34560958 - 34560906
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcct 331  Q
    ||||||| || |||||||||||| | |||||||||||||||| | ||||||||    
T  34560958 ttatgaaagaatatggaaataaaaaatcttggactaaattgtatagtgttcct 34560906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 96 - 330
Target Start/End: Original strand, 24723175 - 24723415
Alignment:
Q  96 gtggaactcttaattggttgccatataatcattcaagtattgtttctcttgatttggagaaagagtcttatcgagagctacagctgcctgattatgtatc 195  Q
    ||||||||||| ||| ||| |||||| ||||||  |||||||||||||||||||||||||| |||||||||| |||||||   || |||||||||  |||    
T  24723175 gtggaactctttatttgttaccatatgatcatttgagtattgtttctcttgatttggagaaggagtcttatcaagagctatttcttcctgattatagatc 24723274  T
Q  196 ------tgtggtaagtaaatccttatgggtgctgagagattgcctctgcatactttcttttcataccgacgcttattcagaaatctggcttatgaaggag 289  Q
          |||| |  ||||||||||||| ||| |||  |||||| | ||||||||||||| |||||  |    || ||||||  | |||||||||||||||    
T  24723275 gacgtatgtgttccgtaaatccttatgtgtgttgaaggattgcttgtgcatactttcttctcatattggttgttcttcagaggtttggcttatgaaggag 24723374  T
Q  290 tatggaaataaagattcttggactaaattgtttcgtgttcc 330  Q
    |||  |||||  || ||||||||||||||||| | ||||||    
T  24723375 tatataaatagtgaatcttggactaaattgttccatgttcc 24723415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 3927069 - 3927111
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgtt 321  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  3927069 ttatgaaggattatggaaataaaaattcttggactaaattgtt 3927111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 1078201 - 1078159
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgtt 321  Q
    ||||||||||||||||||||| ||| || ||||||||||||||    
T  1078201 ttatgaaggagtatggaaatagagagtcgtggactaaattgtt 1078159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 1421214 - 1421170
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaattg 319  Q
    |||||||||||||| || ||||||||||| ||||||| |||||||    
T  1421214 tggcttatgaaggaatacggaaataaagagtcttggattaaattg 1421170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 55419785 - 55419835
Alignment:
Q  272 atctggcttatgaaggagtatggaaataaagattcttggactaaattgttt 322  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  55419785 atctggcttatgaaggtttatggaaataaagattcttggactaaattgttt 55419835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 22672166 - 22672126
Alignment:
Q  281 atgaaggagtatggaaataaagattcttggactaaattgtt 321  Q
    |||||||| ||||||||||| || |||||||||||||||||    
T  22672166 atgaaggaatatggaaataaggaatcttggactaaattgtt 22672126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 321
Target Start/End: Original strand, 2442049 - 2442091
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgtt 321  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2442049 ttatgaaggagtatggaaataaagattcttggactaaattgtt 2442091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 4142179 - 4142133
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaattgtt 321  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||    
T  4142179 tggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 4142133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 275 - 321
Target Start/End: Complemental strand, 4157989 - 4157943
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaattgtt 321  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||    
T  4157989 tggcttatgaaggaatatggaaataaagagtcttggactaaattgtt 4157943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 3754610 - 3754674
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcctcgcatgggagat 343  Q
    |||||||||| |||||||||||||| ||||||||||||||||||  | ||||| ||||| |||||    
T  3754610 ttatgaaggaatatggaaataaagagtcttggactaaattgtttactattccttgcatgagagat 3754674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 23197018 - 23197074
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcct 331  Q
    ||||| |||||||| ||||||||| |||| ||||||||||||||||||||| |||||    
T  23197018 tggctgatgaaggaatatggaaatgaagaatcttggactaaattgtttcgtattcct 23197074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 320
Target Start/End: Original strand, 2456259 - 2456300
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgt 320  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  2456259 ttatgaaggaatatggaaataaagactcttggactaaattgt 2456300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 2644403 - 2644362
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgt 320  Q
    |||||||||||||||||||| |||| ||||||||||||||||    
T  2644403 ttatgaaggagtatggaaatcaagagtcttggactaaattgt 2644362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 2659193 - 2659152
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgt 320  Q
    |||||||||||||||||||| |||| ||||||||||||||||    
T  2659193 ttatgaaggagtatggaaatcaagagtcttggactaaattgt 2659152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 2492092 - 2492144
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcct 331  Q
    ||||||||||||||||||||  ||| |||||||||||||||| | ||||||||    
T  2492092 ttatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgttcct 2492144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 7324472 - 7324420
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcct 331  Q
    |||||||||| || ||||||||||| |||||||||||||||| | ||||||||    
T  7324472 ttatgaaggactacggaaataaagagtcttggactaaattgtatagtgttcct 7324420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 320
Target Start/End: Complemental strand, 746422 - 746383
Alignment:
Q  281 atgaaggagtatggaaataaagattcttggactaaattgt 320  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  746422 atgaaggagtatggaaatcaagagtcttggactaaattgt 746383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 322
Target Start/End: Original strand, 2459285 - 2459328
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgttt 322  Q
    |||||||||| |||||||||||||| |||||||| |||||||||    
T  2459285 ttatgaaggaatatggaaataaagagtcttggacaaaattgttt 2459328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 328
Target Start/End: Complemental strand, 7398218 - 7398171
Alignment:
Q  281 atgaaggagtatggaaataaagattcttggactaaattgtttcgtgtt 328  Q
    |||||||||||||||||| |||| ||||||| |||||||||| |||||    
T  7398218 atgaaggagtatggaaatgaagagtcttggattaaattgttttgtgtt 7398171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 318
Target Start/End: Complemental strand, 9608385 - 9608346
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaatt 318  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  9608385 ttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 318
Target Start/End: Original strand, 13498234 - 13498273
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaatt 318  Q
    |||||||||| |||||||||||||| ||||||||||||||    
T  13498234 ttatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 2696773 - 2696731
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgtt 321  Q
    |||||||||| |||||||||||||| ||||||| |||||||||    
T  2696773 ttatgaaggaatatggaaataaagagtcttggattaaattgtt 2696731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 331
Target Start/End: Complemental strand, 7443016 - 7442966
Alignment:
Q  281 atgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcct 331  Q
    |||||||||||||||||| |||| ||||||||||| |||| | ||||||||    
T  7443016 atgaaggagtatggaaatcaagagtcttggactaagttgtatagtgttcct 7442966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 754650 - 754609
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgt 320  Q
    ||||||||||||||||| || |||| ||||||||||||||||    
T  754650 ttatgaaggagtatggagatcaagagtcttggactaaattgt 754609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 771540 - 771499
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgt 320  Q
    |||||||||| |||||||||| ||| ||||||||||||||||    
T  771540 ttatgaaggaatatggaaatacagactcttggactaaattgt 771499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Original strand, 1438005 - 1438046
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgt 320  Q
    |||||||||| |||||||||||||| ||||||| ||||||||    
T  1438005 ttatgaaggaatatggaaataaagactcttggattaaattgt 1438046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 1891105 - 1891064
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgt 320  Q
    ||||||||||  ||||||||||||| ||||||||||||||||    
T  1891105 ttatgaaggaacatggaaataaagactcttggactaaattgt 1891064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Original strand, 2631367 - 2631408
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgt 320  Q
    |||||||||| ||||||||| |||| ||||||||||||||||    
T  2631367 ttatgaaggaatatggaaatcaagagtcttggactaaattgt 2631408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 7432094 - 7432053
Alignment:
Q  280 tatgaaggagtatggaaataaagattcttggactaaattgtt 321  Q
    ||||||||| |||||||||||||| || ||||||||||||||    
T  7432094 tatgaaggaatatggaaataaagaatcgtggactaaattgtt 7432053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Original strand, 7942495 - 7942536
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgt 320  Q
    |||||||||||||||| |||||||| ||||||| ||||||||    
T  7942495 ttatgaaggagtatggtaataaagagtcttggattaaattgt 7942536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 768370 - 768318
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcct 331  Q
    ||||||| ||||| |||||| |||| ||||||||||||||||| | |||||||    
T  768370 ttatgaatgagtacggaaatgaagagtcttggactaaattgttccatgttcct 768318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 989408 - 989448
Alignment:
Q  281 atgaaggagtatggaaataaagattcttggactaaattgtt 321  Q
    ||||| ||||| ||||||||||| |||||||||||||||||    
T  989408 atgaaagagtacggaaataaagagtcttggactaaattgtt 989448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 23231027 - 23230971
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcct 331  Q
    ||||| ||||| || ||||||||| |||| ||||||| ||||||||||||| |||||    
T  23231027 tggctaatgaaagaatatggaaatgaagagtcttggattaaattgtttcgtattcct 23230971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 23234911 - 23234855
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcct 331  Q
    ||||| ||||| || ||||||||   ||| |||||||||||||||||||||||||||    
T  23234911 tggctgatgaaagaatatggaaacgtagagtcttggactaaattgtttcgtgttcct 23234855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 322
Target Start/End: Original strand, 11081823 - 11081866
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgttt 322  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  11081823 ttatgaaggagtatggaaataaagagtcttggactaaattgttt 11081866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 23766903 - 23766861
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgtt 321  Q
    ||||||| || |||||||||||||| |||||||||||||||||    
T  23766903 ttatgaaagaatatggaaataaagagtcttggactaaattgtt 23766861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 23816751 - 23816709
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgtt 321  Q
    ||||||| || |||||||||||||| |||||||||||||||||    
T  23816751 ttatgaaagaatatggaaataaagagtcttggactaaattgtt 23816709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 20305860 - 20305905
Alignment:
Q  273 tctggcttatgaaggagtatggaaataaagattcttggactaaatt 318  Q
    ||||| |||||||||| ||||||| |||||| ||||||||||||||    
T  20305860 tctggattatgaaggaatatggaattaaagagtcttggactaaatt 20305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 20310264 - 20310309
Alignment:
Q  273 tctggcttatgaaggagtatggaaataaagattcttggactaaatt 318  Q
    ||||| |||||||||| ||||||| |||||| ||||||||||||||    
T  20310264 tctggattatgaaggaatatggaattaaagagtcttggactaaatt 20310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 3181723 - 3181767
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaattg 319  Q
    |||||||||||||| ||||||||| |||| ||||||| |||||||    
T  3181723 tggcttatgaaggaatatggaaatgaagagtcttggattaaattg 3181767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 32374 - 32318
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcct 331  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||| ||||| |||||    
T  32374 tggcttatgaaggaatatggaaataaagactcttggattaaattgattcgtcttcct 32318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 40426 - 40370
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcct 331  Q
    |||||||||||||| |||| ||||||||| ||||||| ||||||| ||||| |||||    
T  40426 tggcttatgaaggaatatgaaaataaagactcttggattaaattgattcgtcttcct 40370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 176340 - 176386
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaattgtt 321  Q
    |||| |||||| || ||||||||||||||||||||||||||||||||    
T  176340 tggcgtatgaatgattatggaaataaagattcttggactaaattgtt 176386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 370826 - 370784
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgtt 321  Q
    |||||||| | ||||||||||||||||||||||||||||||||    
T  370826 ttatgaagaattatggaaataaagattcttggactaaattgtt 370784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 1442149 - 1442107
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgtt 321  Q
    |||||||||| ||||||| ||||||||||||||||||||||||    
T  1442149 ttatgaaggattatggaattaaagattcttggactaaattgtt 1442107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 19119075 - 19119125
Alignment:
Q  281 atgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcct 331  Q
    |||||||| ||||||||| |||| ||||||||||||||||||| |||||||    
T  19119075 atgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttcct 19119125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 19126369 - 19126419
Alignment:
Q  281 atgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcct 331  Q
    |||||||| ||||||||| |||| ||||||||||||||||||| |||||||    
T  19126369 atgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttcct 19126419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 17368372 - 17368428
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcct 331  Q
    ||||| ||||| |||||||||||| |||  ||||||||||||||||||| |||||||    
T  17368372 tggctgatgaaagagtatggaaatgaagggtcttggactaaattgtttcatgttcct 17368428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 322
Target Start/End: Complemental strand, 1470964 - 1470921
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgttt 322  Q
    ||||||| || ||||||||||||||||||||| |||||||||||    
T  1470964 ttatgaaagattatggaaataaagattcttggtctaaattgttt 1470921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 7564792 - 7564741
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcc 330  Q
    |||||||||| |||||||| || ||||||||||||||||||||  |||||||    
T  7564792 ttatgaaggattatggaaacaaggattcttggactaaattgttcagtgttcc 7564741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 318
Target Start/End: Complemental strand, 9703931 - 9703888
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaatt 318  Q
    |||||||||||||| |||||||||| ||||| ||||||||||||    
T  9703931 tggcttatgaaggaatatggaaatagagatttttggactaaatt 9703888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 318
Target Start/End: Complemental strand, 9819874 - 9819831
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaatt 318  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||    
T  9819874 tggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 1453888 - 1453839
Alignment:
Q  272 atctggcttatgaaggagtatggaaataaagattcttggactaaattgtt 321  Q
    |||||| |||||||| | |||||||||||||| ||||||| |||||||||    
T  1453888 atctgggttatgaagtattatggaaataaagactcttggaataaattgtt 1453839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 1465580 - 1465531
Alignment:
Q  272 atctggcttatgaaggagtatggaaataaagattcttggactaaattgtt 321  Q
    |||||| |||||||| | |||||||||||||| ||||||| |||||||||    
T  1465580 atctgggttatgaagtattatggaaataaagactcttggaataaattgtt 1465531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 24417527 - 24417486
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgt 320  Q
    ||||||| || |||||||||||||| ||||||||||||||||    
T  24417527 ttatgaaagaatatggaaataaagaatcttggactaaattgt 24417486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 17362083 - 17362139
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcct 331  Q
    ||||| ||||||||||| |||||  |||  |||||||||||||| ||||||||||||    
T  17362083 tggctgatgaaggagtacggaaacgaagggtcttggactaaattatttcgtgttcct 17362139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 320
Target Start/End: Original strand, 89153 - 89194
Alignment:
Q  279 ttatgaaggagtatggaaataaagattcttggactaaattgt 320  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  89153 ttatgaaggaatatggaaataaagagtcttggactaaattgt 89194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 23896182 - 23896126
Alignment:
Q  275 tggcttatgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcct 331  Q
    |||||||||||||| |||||||||||||| ||||||  ||||||  ||| |||||||    
T  23896182 tggcttatgaaggaatatggaaataaagagtcttgggttaaatttattcatgttcct 23896126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 51858618 - 51858678
Alignment:
Q  281 atgaaggagtatggaaataaagattcttggactaaattgtttcgtgttcctcgcatgggag 341  Q
    |||||||| |||||||||  ||| |||||||||||||||||  |||||||||  |||||||    
T  51858618 atgaaggaatatggaaatgtagaatcttggactaaattgttaagtgttcctcaaatgggag 51858678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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