View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6213_high_8 (Length: 372)
Name: NF6213_high_8
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6213_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 6 - 359
Target Start/End: Complemental strand, 34824653 - 34824307
Alignment:
| Q |
6 |
tgtttagttatcatagatgaataaatacatcgtgccttacaatacttgcgtgctttgtgctaacataagaccttcacgctatagttagagagtatgagca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | || | ||||| ||||||||||||||||| |
|
|
| T |
34824653 |
tgtttagttatcatagatgaataaatacatcgtgccttccaatacttgcgtgctttgtgctt---ttggatgt----gctatggttagagagtatgagca |
34824561 |
T |
|
| Q |
106 |
acaaggtttacatcatttttcttgtgataaatccagtcatacagactacaattttgatgatttagtaacaaggctcgacatttataaacggcaaataaaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34824560 |
acaaggtttacatcatttttcttgtgataaatccagtcatacagactacaattttgatgatttagtaacaaggctcgacatttataaacggcaaataaaa |
34824461 |
T |
|
| Q |
206 |
cccgttccaactcagccatatataagaacgttaattaattgtcgttcaactttacagtaagatccttgtgagtcatcaaaggttatactggatgatggct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34824460 |
cccgttccaactcagccatatataagaacgttaattaattgttgttcaactttacagtaagatccttgtgagtcatcaaaggttatactggatgatggct |
34824361 |
T |
|
| Q |
306 |
tgtactggagttgctatgatgggttctttgcaccaagctcatttgactaacttg |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34824360 |
tgtactggagttgctatgatgggttctttgcaccaagctcatttgactaacttg |
34824307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 44148463 - 44148423
Alignment:
| Q |
297 |
atgatggcttgtactggagttgctatgatgggttctttgca |
337 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| ||||||||| |
|
|
| T |
44148463 |
atgatggcgtgtactggagttgctatcatggcttctttgca |
44148423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University