View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6213_low_1 (Length: 662)
Name: NF6213_low_1
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6213_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 11 - 477
Target Start/End: Original strand, 47043060 - 47043528
Alignment:
| Q |
11 |
catcatcattgaattaattagacaaatgatttttcattannnnnnnaaaggcatttgctttattatgctttctgttttaaacaaaaccaaagtgagacca |
110 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47043060 |
catcatcattggattaattagacaaatgatttttcattatttttttaaaggcatttgctttattatgctttctgttttaaacaaaaccaaagtgagacca |
47043159 |
T |
|
| Q |
111 |
taatattgagcaattttagaataagag--aatacttcaaattttgatttcatttaaattaatatgatagtaaatagttaccttcgatgccaaaattttga |
208 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
47043160 |
taatattgagcaattttagaataagagagaatacttcaaattttgatttcatttaaattaatatgatagtaaatagtgaccttcgatgccaacattttga |
47043259 |
T |
|
| Q |
209 |
tttcacaagtttcatatcattaaaggcatgccactgtattttctatttatttgtctgcatgcacctggttagctccaccgccacgactctccatggtcac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47043260 |
tttcacaagtttcatatcattaaaggcatgccactgtattttctatttatttgtctgcatgcacctggttagctccaccgccacgactctccatggtcac |
47043359 |
T |
|
| Q |
309 |
attacaattaacatacgtctccttttggctccctgaagatgtgtttcccataaaagagaaccgttaagcatcacattagacaaattttaccatggcgatc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47043360 |
attacaattaacatacgtctccttttggctccctgaagatgtgtttcccataaaagagaaccgttaagcatcacattagacaaattttaccatggccatc |
47043459 |
T |
|
| Q |
409 |
cctatgaaatcgacggtcacgttatcatagtaaaaatatgcattgataaaataaaaatgtaatcctgac |
477 |
Q |
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| T |
47043460 |
cctatgaaatcgacggtcacgttatcatagtaaaaatatgcattgataaaataaaaatgtaatcctgac |
47043528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 507 - 652
Target Start/End: Original strand, 47043557 - 47043702
Alignment:
| Q |
507 |
aaagaataatcttctatttaaactgaaaataacattcataaatacaaaaaatagtcatcattataacaaattccaaaacctgagagttaaagttagagac |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47043557 |
aaagaataatcttctatttaaactgaaaataacattcataaatacaaaaaatagtcatcattataacaaattccaaaacctgagagttaaagttagagac |
47043656 |
T |
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| Q |
607 |
gtccaacttgcaactacaacaactacggtgtggctacttgatgatg |
652 |
Q |
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| T |
47043657 |
gtccaacttgcaactacaacaactacggtgtggctacttgatgatg |
47043702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 541
Target Start/End: Original strand, 17902294 - 17902328
Alignment:
| Q |
507 |
aaagaataatcttctatttaaactgaaaataacat |
541 |
Q |
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| T |
17902294 |
aaagaataatcttctatttaaattgaaaataacat |
17902328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 543
Target Start/End: Original strand, 1112500 - 1112536
Alignment:
| Q |
507 |
aaagaataatcttctatttaaactgaaaataacattc |
543 |
Q |
| |
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||||| |||||||||||||||| |||||||||||||| |
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| T |
1112500 |
aaagattaatcttctatttaaattgaaaataacattc |
1112536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 23688387 - 23688420
Alignment:
| Q |
507 |
aaagaataatcttctatttaaactgaaaataaca |
540 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
23688387 |
aaagaataatcttctatttaaattgaaaataaca |
23688420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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