View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6213_low_22 (Length: 248)
Name: NF6213_low_22
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6213_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 3658883 - 3659123
Alignment:
| Q |
1 |
ccttccttttggattagggagaagagcttgtcctggatcgttgtttgctacacaagttattctcattacacttgctcgtttacttcatgggtttgatttg |
100 |
Q |
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| T |
3658883 |
ccttccttttggattagggagaagagcttgtcctggatcgttgtttgctacacaagttattctcattacacttgctcgtttacttcatgggtttgatttg |
3658982 |
T |
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| Q |
101 |
gaagtgccaatggatgaagttgttgatatgagagaagggttgggtattaccttgcctaagttaactccattgcaagttgttttgaccccgcgattatcat |
200 |
Q |
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| T |
3658983 |
gaagtgccaatggatgaagttgttgatatgagagaagggttgggtattaccttgcctaagttaactccattgcaagttgttttgaccccgcgattatcat |
3659082 |
T |
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| Q |
201 |
gtgaactctatcgattataaacattttcccttttgtctgtg |
241 |
Q |
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| T |
3659083 |
gtgaactctatcgattataaacattttcccttttgtgtgtg |
3659123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 7843137 - 7843348
Alignment:
| Q |
1 |
ccttccttttggattagggagaagagcttgtcctggatcgttgtttgctacacaagttattctcattacacttgctcgtttacttcatgggtttgatttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||| || | |||||||||||||||||| |
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| T |
7843137 |
ccttccttttggattagggagaagagcttgtcctggatctttgtttgctacacaaaatagtctcattacacttgcatgtcttcttcatgggtttgatttg |
7843236 |
T |
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| Q |
101 |
gaagtgccaatggatgaagttgttgatatgagagaagggttgggtattaccttgcctaagttaactccattgcaagttgttttgaccccgcgattatcat |
200 |
Q |
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| T |
7843237 |
gaagtgccaatggatgaagttgttgatatgagagaaggtttgggaataactttacctaagttaactccattgcaagttgttttgaccccacgattaccct |
7843336 |
T |
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| Q |
201 |
gtgaactctatc |
212 |
Q |
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| T |
7843337 |
ttgaactctatc |
7843348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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