View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6213_low_24 (Length: 240)
Name: NF6213_low_24
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6213_low_24 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 3658684 - 3658905
Alignment:
| Q |
19 |
gtccactattagtaccccatgaagcaacagaagattgttacattcaagactattatgtaccaaaagggacacgtgtgtttgcaaatgtgtggaaattaca |
118 |
Q |
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| T |
3658684 |
gtccactattagtaccccatgaagtaacagaagattgttacattcaagactattatgtaccaaaagggacacgtgtgtttgcaaatgtgtggaaattaca |
3658783 |
T |
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| Q |
119 |
tagagatccaagtatttggttagagcctgaaaagtttttacctgaaaggtttattaatgagaatggagaaattgatcatgaaagtcaccattttgagtac |
218 |
Q |
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| T |
3658784 |
tagagatccaagtatttggttagagcctgaaaagtttttacctgaaaggtttattaatgagaatggagaaattgatcatgaaagtcaccattttgagtac |
3658883 |
T |
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| Q |
219 |
cttccttttggattagggagaa |
240 |
Q |
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| T |
3658884 |
cttccttttggattagggagaa |
3658905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 7842939 - 7843159
Alignment:
| Q |
20 |
tccactattagtaccccatgaagcaacagaagattgttacattcaagactattatgtaccaaaagggacacgtgtgtttgcaaatgtgtggaaattacat |
119 |
Q |
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| T |
7842939 |
tccactactagcaccccatgaagccacagaagattgtaacattcaaggctattatgtaccaaaaggaacacgtgtatttttcaatgtatggaaattacat |
7843038 |
T |
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| Q |
120 |
agagatccaagtatttggttagagcctgaaaagtttttacctgaaaggtttattaatgagaatggagaaattgatcatgaaagtcaccattttgagtacc |
219 |
Q |
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| T |
7843039 |
agagatccaagtatttggtcagagcctgaaaagtttttacctgaaaggtttattaatgagaatggagaaattgatcatgaaagtcatcattttgagtacc |
7843138 |
T |
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| Q |
220 |
ttccttttggattagggagaa |
240 |
Q |
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| T |
7843139 |
ttccttttggattagggagaa |
7843159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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