View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6213_low_25 (Length: 240)
Name: NF6213_low_25
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6213_low_25 |
 | |
|
| [»] scaffold0055 (10 HSPs) |
| | |
|
| [»] scaffold0052 (10 HSPs) |
| | |
|
| [»] scaffold0021 (3 HSPs) |
| | |
|
| [»] scaffold0515 (2 HSPs) |
| | |
|
| [»] scaffold0306 (2 HSPs) |
| | |
|
| [»] scaffold0152 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0055 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 15412 - 15187
Alignment:
| Q |
1 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgactcgcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15412 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcacccgttgactcgcacac |
15313 |
T |
|
| Q |
101 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15312 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
15213 |
T |
|
| Q |
201 |
cgctgtagcccacaatcgtgatgatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
15212 |
cgctgtagcccacaatcgtgatgatg |
15187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 48994 - 49219
Alignment:
| Q |
1 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgactcgcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48994 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcacccgttgactcgcacac |
49093 |
T |
|
| Q |
101 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49094 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
49193 |
T |
|
| Q |
201 |
cgctgtagcccacaatcgtgatgatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
49194 |
cgctgtagcccacaatcgtgatgatg |
49219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 60320 - 60545
Alignment:
| Q |
1 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgactcgcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
60320 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcacccgttgactcgcacac |
60419 |
T |
|
| Q |
101 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60420 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
60519 |
T |
|
| Q |
201 |
cgctgtagcccacaatcgtgatgatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
60520 |
cgctgtagcccacaatcgtgatgatg |
60545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #4
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 39746 - 39971
Alignment:
| Q |
1 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgactcgcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
39746 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcacccgttgactcgcatac |
39845 |
T |
|
| Q |
101 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39846 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
39945 |
T |
|
| Q |
201 |
cgctgtagcccacaatcgtgatgatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
39946 |
cgctgtagcccacaatcgtgatgatg |
39971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #5
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 64617 - 64842
Alignment:
| Q |
1 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgactcgcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
64617 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcacccgttgactcgcacac |
64716 |
T |
|
| Q |
101 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
64717 |
atgttagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
64816 |
T |
|
| Q |
201 |
cgctgtagcccacaatcgtgatgatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
64817 |
cgctgtagcccacaatcgtgatgatg |
64842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #6
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 73640 - 73415
Alignment:
| Q |
1 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgactcgcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
73640 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcacccgttgactcgcacac |
73541 |
T |
|
| Q |
101 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
73540 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaataagcgcg |
73441 |
T |
|
| Q |
201 |
cgctgtagcccacaatcgtgatgatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
73440 |
cgctgtagcccacaatcgtgatgatg |
73415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #7
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 26919 - 26717
Alignment:
| Q |
24 |
cggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgactcgcacacatgtcagactccttggtccgtgt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
26919 |
cggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcacccgttgactcgcacatatgtcagactccttggtccgtgt |
26820 |
T |
|
| Q |
124 |
ttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcgcgctgtagcccacaatcgtgatg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26819 |
ttcaagacgggtcgaatggggagcccacaggccgacaccaggagcgcgcatgtgccgaagcacgccgaatcagcgcgcgctgtagcccacaatcgtgatg |
26720 |
T |
|
| Q |
224 |
atg |
226 |
Q |
| |
|
||| |
|
|
| T |
26719 |
atg |
26717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 30752 - 30830
Alignment:
| Q |
14 |
ggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgac |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
30752 |
ggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcggctaacgggtttactcacccgttgac |
30830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 6113 - 6050
Alignment:
| Q |
163 |
aggagcgcgcatgtgccgaagcacgccgaatcagcgcgcgctgtagcccacaatcgtgatgatg |
226 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6113 |
aggagcgcgcatatgctgaagcacgccgaatcagcgcgcgttgtagcccacaatcgtgatgatg |
6050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 159
Target Start/End: Original strand, 30828 - 30858
Alignment:
| Q |
129 |
gacgggtcgaatggggagcccacaggccgac |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30828 |
gacgggtcgaatggggagcccacaggccgac |
30858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 32457 - 32232
Alignment:
| Q |
1 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgactcgcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
32457 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcacccgttgactcgcacac |
32358 |
T |
|
| Q |
101 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32357 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
32258 |
T |
|
| Q |
201 |
cgctgtagcccacaatcgtgatgatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
32257 |
cgctgtagcccacaatcgtgatgatg |
32232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 37311 - 37086
Alignment:
| Q |
1 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgactcgcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37311 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcacccgttgactcgcacac |
37212 |
T |
|
| Q |
101 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37211 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
37112 |
T |
|
| Q |
201 |
cgctgtagcccacaatcgtgatgatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
37111 |
cgctgtagcccacaatcgtgatgatg |
37086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 45913 - 46138
Alignment:
| Q |
1 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgactcgcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45913 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcacccgttgactcgcacac |
46012 |
T |
|
| Q |
101 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46013 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
46112 |
T |
|
| Q |
201 |
cgctgtagcccacaatcgtgatgatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
46113 |
cgctgtagcccacaatcgtgatgatg |
46138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #4
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 14704 - 14929
Alignment:
| Q |
1 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgactcgcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14704 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcacccgttgactcgcacac |
14803 |
T |
|
| Q |
101 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14804 |
atgttagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
14903 |
T |
|
| Q |
201 |
cgctgtagcccacaatcgtgatgatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
14904 |
cgctgtagcccacaatcgtgatgatg |
14929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #5
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 23519 - 23744
Alignment:
| Q |
1 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgactcgcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23519 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcacccgttgactcgcacac |
23618 |
T |
|
| Q |
101 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23619 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaataagcgcg |
23718 |
T |
|
| Q |
201 |
cgctgtagcccacaatcgtgatgatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
23719 |
cgctgtagcccacaatcgtgatgatg |
23744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #6
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 60592 - 60817
Alignment:
| Q |
1 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgactcgcacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
60592 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcacccgttgactcgcacac |
60691 |
T |
|
| Q |
101 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60692 |
atgttagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
60791 |
T |
|
| Q |
201 |
cgctgtagcccacaatcgtgatgatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
60792 |
cgctgtagcccacaatcgtgatgatg |
60817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #7
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 24 - 226
Target Start/End: Original strand, 69146 - 69348
Alignment:
| Q |
24 |
cggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgactcgcacacatgtcagactccttggtccgtgt |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
69146 |
cggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcacccgttgactcgcacatatgtcagactccttggtccgtgt |
69245 |
T |
|
| Q |
124 |
ttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcgcgctgtagcccacaatcgtgatg |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
69246 |
ttcaagacgggtcgaatggggagcccacaggccgacaccaggagcgcgcatgtgccgaagcacgccgaatcagcgcgcgctgtagcccacaatcgtgatg |
69345 |
T |
|
| Q |
224 |
atg |
226 |
Q |
| |
|
||| |
|
|
| T |
69346 |
atg |
69348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 65313 - 65235
Alignment:
| Q |
14 |
ggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgac |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
65313 |
ggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcggctaacgggtttactcacccgttgac |
65235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 78422 - 78485
Alignment:
| Q |
163 |
aggagcgcgcatgtgccgaagcacgccgaatcagcgcgcgctgtagcccacaatcgtgatgatg |
226 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
78422 |
aggagcgcgcatatgctgaagcacgccgaatcagcgcgcgttgtagcccacaatcgtgatgatg |
78485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 159
Target Start/End: Complemental strand, 65237 - 65207
Alignment:
| Q |
129 |
gacgggtcgaatggggagcccacaggccgac |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
65237 |
gacgggtcgaatggggagcccacaggccgac |
65207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 89041 - 89266
Alignment:
| Q |
1 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgactcgcacac |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
89041 |
cacaaaagataggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcacctaatgggtttactcgcccgttgactcgcacac |
89140 |
T |
|
| Q |
101 |
atgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcg |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
89141 |
gtgtcagactccttggtctgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacaccgaatcagcgca |
89240 |
T |
|
| Q |
201 |
cgctgtagcccacaatcgtgatgatg |
226 |
Q |
| |
|
|| ||||||||||||||||||||||| |
|
|
| T |
89241 |
cgttgtagcccacaatcgtgatgatg |
89266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 41421 - 41535
Alignment:
| Q |
4 |
aaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgactcgcacacatg |
103 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41421 |
aaaagatcggggtcggtcggcggagcaacccacaagaggatcccaccaatcagcttccttgcgcctaatgggtttactcgcccgttgactcgcacacatg |
41520 |
T |
|
| Q |
104 |
tcagactccttggtc |
118 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
41521 |
tcagactccttggtc |
41535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 61216 - 61289
Alignment:
| Q |
84 |
cccgttgactcgcacacatgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccg |
157 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
61216 |
cccgtcgactcgcacgcatgtcagactccttggtccgtgtttcaagacgggtcggatggggagcccgcaggccg |
61289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0515 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0515
Description:
Target: scaffold0515; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 9042 - 8935
Alignment:
| Q |
119 |
cgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcgcgctgtagcccacaatcg |
218 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
9042 |
cgtgtttcaagaagtttcgaatggggagcccacaggccgacgctaggagcgtgcatgtgccgaagcacaccgaatcagcacgcgctgtagcccacaatct |
8943 |
T |
|
| Q |
219 |
tgatgatg |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
8942 |
tgatgatg |
8935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0515; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 9113 - 9036
Alignment:
| Q |
1 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggttt |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9113 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgtgttt |
9036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0306
Description:
Target: scaffold0306; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 9052 - 8945
Alignment:
| Q |
119 |
cgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcgcgctgtagcccacaatcg |
218 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
9052 |
cgtgtttcaagaagtttcgaatggggagcccacaggccgacgctaggagcgtgcatgtgccgaagcacaccgaatcagcacgcgctgtagcccacaatct |
8953 |
T |
|
| Q |
219 |
tgatgatg |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
8952 |
tgatgatg |
8945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 9102 - 9046
Alignment:
| Q |
22 |
ggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggttt |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9102 |
ggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgtgttt |
9046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 26663 - 26556
Alignment:
| Q |
119 |
cgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcgcgctgtagcccacaatcg |
218 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
26663 |
cgtgtttcaagaagtttcgaatggggagcccacaggccgacgctaggagcgtgcatgtgccgaagcacaccgaatcagcacgcgctgtagcccacaatct |
26564 |
T |
|
| Q |
219 |
tgatgatg |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
26563 |
tgatgatg |
26556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 226
Target Start/End: Complemental strand, 35439 - 35332
Alignment:
| Q |
119 |
cgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagcacgccgaatcagcgcgcgctgtagcccacaatcg |
218 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
35439 |
cgtgtttcaagaagtttcgaatggggagcccacaggccgacgctaggagcgtgcatgtgccgaagcacaccgaatcagcacgcgctgtagcccacaatct |
35340 |
T |
|
| Q |
219 |
tgatgatg |
226 |
Q |
| |
|
|||||||| |
|
|
| T |
35339 |
tgatgatg |
35332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 26734 - 26657
Alignment:
| Q |
1 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggttt |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26734 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgtgttt |
26657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 35510 - 35433
Alignment:
| Q |
1 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggttt |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35510 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgtgttt |
35433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 51150674 - 51150484
Alignment:
| Q |
1 |
cacaaaagatcggggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacggg-tttactcgcccgttgactcgca-- |
97 |
Q |
| |
|
|||| |||||| |||||| | | ||||||||||||||||||||||| |||||||||||||||||||||| | ||| |||||| ||||||||| ||||| |
|
|
| T |
51150674 |
cacagaagatcagggtcgattgacggtgcaacccacaagaggatccaaccaatcagcttccttgcgccttatgggttttacttgcccgttgattcgcaca |
51150575 |
T |
|
| Q |
98 |
---cacatgtcagactccttggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgcatgtgccgaagca |
185 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| | || | |||||| ||||||| || | |||| |||||||||| |
|
|
| T |
51150574 |
catcacatgtcagactccttgatccgtttttcaagacgggtcgaatgagaagtctacaggctgacgccataagtgtgcatatgccgaagca |
51150484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 12591866 - 12591908
Alignment:
| Q |
184 |
cacgccgaatcagcgcgcgctgtagcccacaatcgtgatgatg |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12591866 |
cacgccgaatcagcgcgcgctgtagcccacaatcgtgatgatg |
12591908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 5028555 - 5028397
Alignment:
| Q |
14 |
ggtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgactcgcacacatgtcagactcct |
113 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||| |||| || || |||| ||| |||| |||||||||||||| || | ||| |
|
|
| T |
5028555 |
ggtcggtcagcggtgcaatccacaagaggatcccaccaatcagcttccatgcgacttac-agttttctcttccgtcgactcgcacacatgccacagccct |
5028457 |
T |
|
| Q |
114 |
tggtccgtgtttcaagacgggtcgaatggggagcccacaggccgacgccaggagcgcgca |
173 |
Q |
| |
|
||||| ||||| |||||| || |||||||| ||||| ||||||||| |||| ||||| |
|
|
| T |
5028456 |
tggtctgtgttataagacgaatcaaatggggaccccacctgccgacgcctggagtgcgca |
5028397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 23670408 - 23670292
Alignment:
| Q |
15 |
gtcggtcggcggtgcaacccacaagaggatcccaccaatcagcttccttgcgcctaacgggtttactcgcccgttgactcgcacacatgtcagactcctt |
114 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| ||||||| || ||||| | | |||||||||||| || | |||||| |||| ||| ||| |||| |
|
|
| T |
23670408 |
gtcggttgacggtgcaacccacaagaggatcccgccaatcaactaacttgctcatcacgggtttactcatccatagactcgaacacgcgtccgacacctt |
23670309 |
T |
|
| Q |
115 |
ggtccgtgtttcaagac |
131 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
23670308 |
ggttcgtgtttcaagac |
23670292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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