View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6213_low_26 (Length: 239)
Name: NF6213_low_26
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6213_low_26 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 6086639 - 6086418
Alignment:
| Q |
18 |
ctttttagtatattcaaaagtatctactaaaaatgtccaaattcgtctctcactaaaataactctctaacatcctcttaatttctcatcaatagaatgac |
117 |
Q |
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| T |
6086639 |
ctttttagtatattcaaaagtatctactaaaaatgtccaaattcgtctctcactaaaataactctctaacatcctcttaatttctcatcaatagaatgac |
6086540 |
T |
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| Q |
118 |
tcatactaatgcttctctttaatttctcatcaatcaataaaataaaccaaattagttctctattgtgaaatgaaatcccttttaagtcactcattcaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6086539 |
tcatactaatgcttctctttaatttctcatcaatcaataaaataaaccaaattagttctctattgtgaaatgaaatcccttttaagtcactcattcaaat |
6086440 |
T |
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| Q |
218 |
ctttgttatcttttaaaacatg |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
6086439 |
ctttgttatcttttaaaacatg |
6086418 |
T |
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