View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6213_low_27 (Length: 238)
Name: NF6213_low_27
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6213_low_27 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 43750970 - 43751203
Alignment:
| Q |
1 |
attaatctctatcatttcatttatctaactaagattttgatttttgagattcannnnnnnataacatgccattttcaatttcttagaggagagtgaagat |
100 |
Q |
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| T |
43750970 |
attaatctctatcatttcatttatctaactaagattttgatttttgagattcatttttt-ataacatgccattttcaatttcttagaggagagtgaagat |
43751068 |
T |
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| Q |
101 |
accactgaatgccttaatgtgaagcatgatcaagagccgaagaattcaacttcaaaaattgctgaagctttaaacaaagcaaaaaattacaaaactaaca |
200 |
Q |
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| T |
43751069 |
accactgaatgccttaatgtgaa---tgatcaagagccgaagaattcaacttcaaaaattgctgaagctttaaacaaagcaaaaaattacaaaactaaca |
43751165 |
T |
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| Q |
201 |
atccctttttcactgttgtcatgacatattcctatgct |
238 |
Q |
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| T |
43751166 |
atccctttttcactgttgtcatgacatattcctatgct |
43751203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 49164504 - 49164738
Alignment:
| Q |
1 |
attaatctctatcatttcatttatctaactaagattttgatttttgagattcannnnnnnataacatgccattttcaatttcttagaggagagtgaagat |
100 |
Q |
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| T |
49164504 |
attaatctctatcatttcatttatttaatcaagattttgatttttgatgttgatttttc-attacataccatattcaatttctcagaagagattgattct |
49164602 |
T |
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| Q |
101 |
accactgaatgccttaatgtgaagcatgatcaagagccgaagaattcaacttcaaaaattgctgaagctttaaacaaagcaaaaaattacaaaactaaca |
200 |
Q |
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| T |
49164603 |
accactaaatgcctgaatgtgaagcatggtcaagagcagaggaattcaactgctaaaattgttgaagctttaaacaaagcaaaaaactatgaatctaaca |
49164702 |
T |
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| Q |
201 |
atccctttttcactgttgtcatgacatattcctatg |
236 |
Q |
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| T |
49164703 |
atccctttttcactgctatcatgacatattcttatg |
49164738 |
T |
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