View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6213_low_28 (Length: 237)

Name: NF6213_low_28
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6213_low_28
NF6213_low_28
[»] chr3 (8 HSPs)
chr3 (1-222)||(25158679-25158900)
chr3 (66-111)||(43426520-43426565)
chr3 (68-119)||(25124772-25124824)
chr3 (3-48)||(17030593-17030638)
chr3 (7-108)||(25125026-25125126)
chr3 (67-111)||(7013171-7013215)
chr3 (66-110)||(18359525-18359569)
chr3 (65-110)||(17030845-17030892)
[»] chr8 (5 HSPs)
chr8 (13-111)||(23289115-23289212)
chr8 (74-110)||(13980099-13980135)
chr8 (74-110)||(23245523-23245559)
chr8 (63-112)||(23288850-23288899)
chr8 (78-115)||(11908397-11908436)
[»] scaffold0188 (1 HSPs)
scaffold0188 (13-111)||(13349-13447)
[»] chr7 (12 HSPs)
chr7 (66-111)||(19377010-19377055)
chr7 (13-111)||(1853363-1853461)
chr7 (3-48)||(1853166-1853211)
chr7 (7-48)||(42957619-42957660)
chr7 (3-38)||(15635161-15635196)
chr7 (3-45)||(2240687-2240729)
chr7 (3-108)||(3092482-3092587)
chr7 (74-111)||(9689224-9689262)
chr7 (73-111)||(45687918-45687956)
chr7 (3-48)||(10931956-10932001)
chr7 (66-111)||(15331693-15331738)
chr7 (1-37)||(25571200-25571236)
[»] chr6 (2 HSPs)
chr6 (66-111)||(3816490-3816535)
chr6 (66-108)||(18274436-18274478)
[»] chr4 (7 HSPs)
chr4 (66-114)||(12324433-12324481)
chr4 (74-116)||(8810204-8810246)
chr4 (66-111)||(37589675-37589721)
chr4 (61-110)||(18509261-18509310)
chr4 (74-111)||(13555601-13555639)
chr4 (73-111)||(49277665-49277703)
chr4 (4-47)||(21744954-21744998)
[»] chr2 (7 HSPs)
chr2 (16-111)||(35790998-35791091)
chr2 (66-110)||(43914522-43914566)
chr2 (74-113)||(42223027-42223066)
chr2 (66-112)||(11915305-11915353)
chr2 (63-111)||(41905990-41906039)
chr2 (71-111)||(31397551-31397591)
chr2 (4-48)||(42223089-42223133)
[»] chr1 (9 HSPs)
chr1 (66-114)||(13437133-13437183)
chr1 (3-109)||(33864275-33864382)
chr1 (3-109)||(33916540-33916647)
chr1 (63-115)||(1701245-1701298)
chr1 (66-111)||(22315145-22315192)
chr1 (66-114)||(33864048-33864096)
chr1 (66-114)||(33916826-33916874)
chr1 (3-48)||(7261541-7261587)
chr1 (64-111)||(18426798-18426846)
[»] chr5 (5 HSPs)
chr5 (62-108)||(17190508-17190554)
chr5 (66-110)||(6527496-6527540)
chr5 (75-111)||(13153825-13153861)
chr5 (66-111)||(15399611-15399658)
chr5 (74-110)||(21144284-21144320)
[»] scaffold0067 (1 HSPs)
scaffold0067 (74-111)||(26004-26041)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 25158900 - 25158679
Alignment:
Q  1 atgtccaaaaccaaaaatattcaaattacagggttggaatccaaacaannnnnnnnacagaaggataaaccaaaaatcgctaatattacaggggtaaaca 100  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||        |||| |||||||||||||||||||||||||||||||||||||||    
T  25158900 atgtccaaaaccaagaatattcaaattacagggttggaatctaaacaattttttttacaggaggataaaccaaaaatcgctaatattacaggggtaaaca 25158801  T
Q  101 tatattaacccaaattataatgttgagtgtgtctcacttacctacagagagatgttacttcattttgatgttatgaatcctatatggctttttccatggg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25158800 tatattaacccaaattataatgttgagtgtgtctcacttacctaaagagagatgttacttcattttgatgttatgaatcctatatggccttttccatggg 25158701  T
Q  201 catctttttcttggttagtatt 222  Q
    ||||||||||||||||||||||    
T  25158700 catctttttcttggttagtatt 25158679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 43426520 - 43426565
Alignment:
Q  66 taaaccaaaaatcgctaatattacaggggtaaacatatattaaccc 111  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||    
T  43426520 taaaccagaaatcgctaatattacgggggtaaacatatattaaccc 43426565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 25124824 - 25124772
Alignment:
Q  68 aaccaaaaatcgctaatattacaggggtaaacatatattaaccc-aaattata 119  Q
    ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||    
T  25124824 aaccagaaatcgctaatattacagggataaacatatattaaccctaaattata 25124772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 17030638 - 17030593
Alignment:
Q  3 gtccaaaaccaaaaatattcaaattacagggttggaatccaaacaa 48  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||||    
T  17030638 gtccaaaaccaaaaatcttcaaattacaaggttggaatctaaacaa 17030593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 25125026 - 25125126
Alignment:
Q  7 aaaaccaaaaatattcaaattacagggttggaatccaaacaannnnnnnnacagaaggataaaccaaaaatcgctaatattacaggggtaaacatatatt 106  Q
    |||||||||||| ||||||||| |||| || |||| ||||||        |||| ||| |||| | ||||||||||||||||||||||||||||| ||||    
T  25125026 aaaaccaaaaatcttcaaattatagggatgaaatctaaacaattttttttacaggagg-taaatcgaaaatcgctaatattacaggggtaaacatgtatt 25125124  T
Q  107 aa 108  Q
    ||    
T  25125125 aa 25125126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 7013215 - 7013171
Alignment:
Q  67 aaaccaaaaatcgctaatattacaggggtaaacatatattaaccc 111  Q
    ||||| |||||||||||||||||| || |||||||||||||||||    
T  7013215 aaaccgaaaatcgctaatattacaaggataaacatatattaaccc 7013171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 18359525 - 18359569
Alignment:
Q  66 taaaccaaaaatcgctaatattacaggggtaaacatatattaacc 110  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||||    
T  18359525 taaaccgaaagtcgctaatattacaggggtaaacatgtattaacc 18359569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 17030845 - 17030892
Alignment:
Q  65 ataaaccaaaaatcgctaatattaca--ggggtaaacatatattaacc 110  Q
    |||||||  |||||||||||||||||  ||||||||||||||||||||    
T  17030845 ataaaccggaaatcgctaatattacataggggtaaacatatattaacc 17030892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 23289115 - 23289212
Alignment:
Q  13 aaaaatattcaaattacagggttggaatccaaacaannnnnnnnacagaaggataaaccaaaaatcgctaatattacaggggtaaacatatattaaccc 111  Q
    |||||| |||||||||||||||||||||| ||||||        ||||  ||||||||| |||||| ||||||||||||||| ||||||||||||||||    
T  23289115 aaaaatcttcaaattacagggttggaatctaaacaattttttttacagg-ggataaaccgaaaatcactaatattacaggggcaaacatatattaaccc 23289212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 13980099 - 13980135
Alignment:
Q  74 aaatcgctaatattacaggggtaaacatatattaacc 110  Q
    ||||| |||||||||||||||||||||||||||||||    
T  13980099 aaatcactaatattacaggggtaaacatatattaacc 13980135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 23245559 - 23245523
Alignment:
Q  74 aaatcgctaatattacaggggtaaacatatattaacc 110  Q
    |||| ||||||||||||||||||||||||||||||||    
T  23245559 aaattgctaatattacaggggtaaacatatattaacc 23245523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 23288899 - 23288850
Alignment:
Q  63 ggataaaccaaaaatcgctaatattacaggggtaaacatatattaaccca 112  Q
    |||||||||  ||||| ||||||||||| | |||||||||||||||||||    
T  23288899 ggataaaccggaaatctctaatattacaagagtaaacatatattaaccca 23288850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 115
Target Start/End: Complemental strand, 11908436 - 11908397
Alignment:
Q  78 cgctaatattaca--ggggtaaacatatattaacccaaat 115  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  11908436 cgctaatattacatgggggtaaacatatattaacccaaat 11908397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 13349 - 13447
Alignment:
Q  13 aaaaatattcaaattacagggttggaatccaaacaannnnnnnnacagaaggataaaccaaaaatcgctaatattaca-ggggtaaacatatattaaccc 111  Q
    |||||| ||||||||||| |||||||||| ||||||        ||||  || ||||||||||||||||||||||||| |||||||||||||||||||||    
T  13349 aaaaatcttcaaattacaaggttggaatctaaacaaatttttttacaggggg-taaaccaaaaatcgctaatattacagggggtaaacatatattaaccc 13447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 19377055 - 19377010
Alignment:
Q  66 taaaccaaaaatcgctaatattacaggggtaaacatatattaaccc 111  Q
    |||||||||||||||||||||||||||||  |||||||||||||||    
T  19377055 taaaccaaaaatcgctaatattacaggggataacatatattaaccc 19377010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 1853363 - 1853461
Alignment:
Q  13 aaaaatattcaaattacagggttggaatccaaacaannnnnnnnacagaaggataaaccaaaaatcgctaatattaca-ggggtaaacatatattaaccc 111  Q
    |||||| ||||||||||| |||||||||| ||||||        |||  ||| ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  1853363 aaaaatcttcaaattacaaggttggaatctaaacaaatttttttacatgagg-taaaccaaaaatcactaatattacagggggtaaacatatattaaccc 1853461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 1853211 - 1853166
Alignment:
Q  3 gtccaaaaccaaaaatattcaaattacagggttggaatccaaacaa 48  Q
    |||||||||||||||| ||||||||||||||| |||||| ||||||    
T  1853211 gtccaaaaccaaaaatcttcaaattacagggtgggaatctaaacaa 1853166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 42957619 - 42957660
Alignment:
Q  7 aaaaccaaaaatattcaaattacagggttggaatccaaacaa 48  Q
    |||||||||||| |||||||||||||||| ||||||||||||    
T  42957619 aaaaccaaaaatcttcaaattacagggttagaatccaaacaa 42957660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 15635196 - 15635161
Alignment:
Q  3 gtccaaaaccaaaaatattcaaattacagggttgga 38  Q
    |||||||||||||||| |||||||||||||||||||    
T  15635196 gtccaaaaccaaaaatcttcaaattacagggttgga 15635161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 2240687 - 2240729
Alignment:
Q  3 gtccaaaaccaaaaatattcaaattacagggttggaatccaaa 45  Q
    |||||||||||||||  |||||||||||||| |||||||||||    
T  2240687 gtccaaaaccaaaaaatttcaaattacagggatggaatccaaa 2240729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 3092482 - 3092587
Alignment:
Q  3 gtccaaaaccaaaaatattcaaattacagggttggaatccaaacaannnnnnnnacagaaggataaaccaaaaatcgctaatattac-aggggtaaacat 101  Q
    |||||||  ||||||| |||||||||||||||||||||| ||||||        ||||  || |||||  |||||||||||| |||| ||||||||||||    
T  3092482 gtccaaatacaaaaatcttcaaattacagggttggaatctaaacaattctttttacag-ggggtaaactgaaaatcgctaattttacaaggggtaaacat 3092580  T
Q  102 atattaa 108  Q
    |||||||    
T  3092581 atattaa 3092587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 9689262 - 9689224
Alignment:
Q  74 aaatcgctaatattacag-gggtaaacatatattaaccc 111  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  9689262 aaatcgctaatattacagagggtaaacatatattaaccc 9689224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 45687918 - 45687956
Alignment:
Q  73 aaaatcgctaatattacaggggtaaacatatattaaccc 111  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  45687918 aaaatcgctaatattagaggggtaaacatgtattaaccc 45687956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 10932001 - 10931956
Alignment:
Q  3 gtccaaaaccaaaaatattcaaattacagggttggaatccaaacaa 48  Q
    |||||||||||||| | ||||||||||||||||| |||| ||||||    
T  10932001 gtccaaaaccaaaattcttcaaattacagggttgaaatctaaacaa 10931956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 15331693 - 15331738
Alignment:
Q  66 taaaccaaaaatcgctaatattacaggggtaaacatatattaaccc 111  Q
    ||||||||||||||||| |||| || ||||||| ||||||||||||    
T  15331693 taaaccaaaaatcgctagtatttcatgggtaaatatatattaaccc 15331738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25571200 - 25571236
Alignment:
Q  1 atgtccaaaaccaaaaatattcaaattacagggttgg 37  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  25571200 atgtccaaaaccaaaaatcttcaaattacaaggttgg 25571236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 3816535 - 3816490
Alignment:
Q  66 taaaccaaaaatcgctaatattacaggggtaaacatatattaaccc 111  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||    
T  3816535 taaaccaaaaatcgctaatattataggggttaacatatattaaccc 3816490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 18274436 - 18274478
Alignment:
Q  66 taaaccaaaaatcgctaatattacaggggtaaacatatattaa 108  Q
    ||||||| | |||||||||||||||||||||||||||||||||    
T  18274436 taaaccagacatcgctaatattacaggggtaaacatatattaa 18274478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 12324433 - 12324481
Alignment:
Q  66 taaaccaaaaatcgctaatattacaggggtaaacatatattaacccaaa 114  Q
    ||||||| || |||| |||||||||||||||||||||||||||||||||    
T  12324433 taaaccagaattcgccaatattacaggggtaaacatatattaacccaaa 12324481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 8810204 - 8810246
Alignment:
Q  74 aaatcgctaatattacaggggtaaacatatattaacccaaatt 116  Q
    |||||||||||||||||||| ||||||||||||||||| ||||    
T  8810204 aaatcgctaatattacagggataaacatatattaaccctaatt 8810246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 37589675 - 37589721
Alignment:
Q  66 taaaccaaaaatcgctaatattacagggg-taaacatatattaaccc 111  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||    
T  37589675 taaaccaaaaaccgctaatattacaggggataaacatatattaaccc 37589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 18509261 - 18509310
Alignment:
Q  61 aaggataaaccaaaaatcgctaatattacaggggtaaacatatattaacc 110  Q
    |||||||||||| |||||| ||||||||| || |||||||||||||||||    
T  18509261 aaggataaaccagaaatcgttaatattaccggagtaaacatatattaacc 18509310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 13555639 - 13555601
Alignment:
Q  74 aaatcgctaatattacag-gggtaaacatatattaaccc 111  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  13555639 aaatcgctaatattacagagggtaaacatatattaaccc 13555601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 49277703 - 49277665
Alignment:
Q  73 aaaatcgctaatattacaggggtaaacatatattaaccc 111  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  49277703 aaaatcgctaatattacaggggtacacatgtattaaccc 49277665  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 21744954 - 21744998
Alignment:
Q  4 tccaaaaccaaa-aatattcaaattacagggttggaatccaaaca 47  Q
    |||||||||||| ||||||||||||||| |||||||||| |||||    
T  21744954 tccaaaaccaaagaatattcaaattacatggttggaatctaaaca 21744998  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 35791091 - 35790998
Alignment:
Q  16 aatattcaaattacagggttggaatccaaacaannnnnnnnacagaaggataaaccaaaaatcgctaatattacaggggtaaacatatattaaccc 111  Q
    |||||||||||||||||||||||||| ||||||        ||||  || ||||| | ||||||||||||||||||||||||| || |||||||||    
T  35791091 aatattcaaattacagggttggaatctaaacaatttattttacag--gggtaaacaagaaatcgctaatattacaggggtaaagatgtattaaccc 35790998  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 43914522 - 43914566
Alignment:
Q  66 taaaccaaaaatcgctaatattacaggggtaaacatatattaacc 110  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||    
T  43914522 taaaccgaaaatcgctaatattacaggggtgaacatatattaacc 43914566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 42223066 - 42223027
Alignment:
Q  74 aaatcgctaatattacaggggtaaacatatattaacccaa 113  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  42223066 aaatcactaatattataggggtaaacatatattaacccaa 42223027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 11915305 - 11915353
Alignment:
Q  66 taaaccaaaaatcgctaatattacagggg--taaacatatattaaccca 112  Q
    |||||| ||||| ||||||||||||||||  ||||||||||||||||||    
T  11915305 taaaccgaaaattgctaatattacaggggggtaaacatatattaaccca 11915353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 41906039 - 41905990
Alignment:
Q  63 ggataaaccaaaaatcgctaatattaca-ggggtaaacatatattaaccc 111  Q
    ||||||||  |||||||||||||||||| ||||||||||| |||||||||    
T  41906039 ggataaactgaaaatcgctaatattacagggggtaaacatgtattaaccc 41905990  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 31397551 - 31397591
Alignment:
Q  71 caaaaatcgctaatattacaggggtaaacatatattaaccc 111  Q
    |||||| ||||||||||| ||||||||||||||||| ||||    
T  31397551 caaaaaccgctaatattaaaggggtaaacatatatttaccc 31397591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 42223133 - 42223089
Alignment:
Q  4 tccaaaaccaaaaatattcaaattacagggttggaatccaaacaa 48  Q
    ||||||||||||| | ||||||||||||||||| |||| ||||||    
T  42223133 tccaaaaccaaaattcttcaaattacagggttgaaatctaaacaa 42223089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 13437133 - 13437183
Alignment:
Q  66 taaaccaaaaatcgctaatattaca--ggggtaaacatatattaacccaaa 114  Q
    |||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  13437133 taaaccgaaaatcgctaatattacaaaggggtaaacatatattaacccaaa 13437183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 33864275 - 33864382
Alignment:
Q  3 gtccaaaaccaaa-aatattcaaattacagggttggaatccaaacaannnnnnnnacagaaggataaaccaaaaatcgctaatattacaggggtaaacat 101  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||||||        |||  ||  ||||| |||||||||||||||||||  |||||||||    
T  33864275 gtccaaaaccaaagaatcttcaaattacagggttggaatctaaacaattttttttacaagagagtaaactaaaaatcgctaatattacataggtaaacat 33864374  T
Q  102 atattaac 109  Q
     |||||||    
T  33864375 gtattaac 33864382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 33916647 - 33916540
Alignment:
Q  3 gtccaaaaccaaa-aatattcaaattacagggttggaatccaaacaannnnnnnnacagaaggataaaccaaaaatcgctaatattacaggggtaaacat 101  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||||||        |||  ||  ||||| |||||||||||||||||||  |||||||||    
T  33916647 gtccaaaaccaaagaatcttcaaattacagggttggaatctaaacaattttttttacaagagagtaaactaaaaatcgctaatattacataggtaaacat 33916548  T
Q  102 atattaac 109  Q
     |||||||    
T  33916547 gtattaac 33916540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 1701245 - 1701298
Alignment:
Q  63 ggataaaccaaaaatcgctaatattacaggg-gtaaacatatattaacccaaat 115  Q
    |||||||||||||||  |||||||||||||| ||||||||||||||||| ||||    
T  1701245 ggataaaccaaaaattactaatattacagggagtaaacatatattaacctaaat 1701298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 22315192 - 22315145
Alignment:
Q  66 taaaccaaaaatcgctaatattacaggg--gtaaacatatattaaccc 111  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||||||    
T  22315192 taaaccagaaatcgctaatattacaggggagtaaacatatattaaccc 22315145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 33864096 - 33864048
Alignment:
Q  66 taaaccaaaaatcgctaatattacaggggtaaacatatattaacccaaa 114  Q
    |||||| |||||||||||||||||||| |||||||| |||||| |||||    
T  33864096 taaaccgaaaatcgctaatattacaggagtaaacatgtattaatccaaa 33864048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 33916826 - 33916874
Alignment:
Q  66 taaaccaaaaatcgctaatattacaggggtaaacatatattaacccaaa 114  Q
    |||||| |||||||||||||||||||| |||||||| |||||| |||||    
T  33916826 taaaccgaaaatcgctaatattacaggagtaaacatgtattaatccaaa 33916874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 7261541 - 7261587
Alignment:
Q  3 gtccaaaaccaaa-aatattcaaattacagggttggaatccaaacaa 48  Q
    ||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  7261541 gtccaaaaccaaagaatgttcaaattacagggttggaatctaaacaa 7261587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 18426798 - 18426846
Alignment:
Q  64 gataaaccaaaaatcgctaatattacag-gggtaaacatatattaaccc 111  Q
    |||||||||||||| ||||||||| ||| || |||||||||||||||||    
T  18426798 gataaaccaaaaattgctaatattgcagaggataaacatatattaaccc 18426846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Complemental strand, 17190554 - 17190508
Alignment:
Q  62 aggataaaccaaaaatcgctaatattacaggggtaaacatatattaa 108  Q
    ||||||||| ||||| || |||||||| |||||||||||||||||||    
T  17190554 aggataaactaaaaaccgttaatattataggggtaaacatatattaa 17190508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 6527496 - 6527540
Alignment:
Q  66 taaaccaaaaatcgctaatattacaggggtaaacatatattaacc 110  Q
    |||||| | |||||||||||||| |||||||||||| ||||||||    
T  6527496 taaaccgataatcgctaatattataggggtaaacatgtattaacc 6527540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 13153825 - 13153861
Alignment:
Q  75 aatcgctaatattacaggggtaaacatatattaaccc 111  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  13153825 aatccctaatattacatgggtaaacatatattaaccc 13153861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 15399658 - 15399611
Alignment:
Q  66 taaaccaaaaatcgctaatattacag--gggtaaacatatattaaccc 111  Q
    ||||||| ||||||||||||||||||  | ||||||||||||||||||    
T  15399658 taaaccagaaatcgctaatattacaggagagtaaacatatattaaccc 15399611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 21144284 - 21144320
Alignment:
Q  74 aaatcgctaatattacaggggtaaacatatattaacc 110  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  21144284 aaatcgctaatattgcaggggtaaacatgtattaacc 21144320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 26004 - 26041
Alignment:
Q  74 aaatcgctaatattacaggggtaaacatatattaaccc 111  Q
    |||||||||||||||  |||||||||||||||||||||    
T  26004 aaatcgctaatattaagggggtaaacatatattaaccc 26041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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