View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6213_low_31 (Length: 230)
Name: NF6213_low_31
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6213_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 103 - 225
Target Start/End: Original strand, 22709171 - 22709293
Alignment:
| Q |
103 |
aagtacatgaatggtcttatttatagatctcaattacaataactacttgactaactaaatcttactacctacttaacatttaaccaactttaattacctt |
202 |
Q |
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| T |
22709171 |
aagtacatggatggtcttatttatagatctcaattacactaactacttgactaaccaaatcttactacctgcttaacatttaaccaactttaattacctt |
22709270 |
T |
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| Q |
203 |
aactaactccacctatcttccaa |
225 |
Q |
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| T |
22709271 |
aattaactccacctatcttccaa |
22709293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 22708989 - 22709071
Alignment:
| Q |
27 |
tggagccaaaagagtttcaaagctttgattaagaaaaagattcatatagatacattttaataaaaagatgggtaataagtacat |
110 |
Q |
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| T |
22708989 |
tggagccaaaagagcttcaaagctttgattaagagaaagattcatatagatacattttaat-aaaagatgggtaataagtacat |
22709071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 64 - 221
Target Start/End: Complemental strand, 23875162 - 23875005
Alignment:
| Q |
64 |
agattcatatagatacattttaataaaaagatgggtaataagtacatgaatggtcttatttatagatctcaattacaataactacttgactaactaaatc |
163 |
Q |
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| T |
23875162 |
agattgatatagaaacattttaataaaa-gatgggtaatgattatatgaatggtcttatttatagatctcaattacaggaactatttgagtaaccaaatc |
23875064 |
T |
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| Q |
164 |
ttactacctacttaaca-tttaaccaactttaattaccttaactaactccacctatctt |
221 |
Q |
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| T |
23875063 |
taactacctacctaacattttaactaactctaactaccttaattaatttcacctttctt |
23875005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 22719383 - 22719431
Alignment:
| Q |
27 |
tggagccaaaagagtttcaaagctttgattaagaaaaagattcatatag |
75 |
Q |
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| T |
22719383 |
tggagccaaaagagcttcaaagctttgattaagaaaaagattcatatag |
22719431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 3458882 - 3458824
Alignment:
| Q |
89 |
aaaagatgggtaataagtacatgaatggtcttatttatagatctcaattacaataacta |
147 |
Q |
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| T |
3458882 |
aaaagatgagtaatgagtacatgtatggtcttatttatagacctcaatcacactaacta |
3458824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 10843186 - 10843238
Alignment:
| Q |
88 |
aaaaagatgggtaataagtacatgaatggtcttatttatagatctcaattaca |
140 |
Q |
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||||||||| || || ||||||||||||| |||||||||||| |||||||||| |
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| T |
10843186 |
aaaaagatgagtgatgagtacatgaatggacttatttatagacctcaattaca |
10843238 |
T |
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