View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6213_low_34 (Length: 211)
Name: NF6213_low_34
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6213_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 64 - 200
Target Start/End: Original strand, 19143992 - 19144127
Alignment:
| Q |
64 |
atttttgggatgggatgagtactgcttgtacttagctaattaaatttattagtagattttcttgtatttcaagaataatgaagcaatgagcaaacataat |
163 |
Q |
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| T |
19143992 |
atttttgggatgg-atgagtactacttgtacttagctaattaaatttgttagtagattttcttgtatttcaagaataatgaagcaatgagcaaacataat |
19144090 |
T |
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| Q |
164 |
catttaaaatgaagaaagcaccaactccattgatgat |
200 |
Q |
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| T |
19144091 |
catttaagatgaagaaagcaccaactccattgatgat |
19144127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 19148967 - 19148866
Alignment:
| Q |
99 |
ctaattaaatttattagtagattttcttgtatttcaagaataatgaagcaatgagcaaacataatcatttaaaatgaagaaagcaccaactccattgatg |
198 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19148967 |
ctaattaaatttgttagtagattttcttgtatttcaagaataatgaagcaatgagcaaacataatcatttaagatgaagaaagcaccaactccattgatg |
19148868 |
T |
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| Q |
199 |
at |
200 |
Q |
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| T |
19148867 |
at |
19148866 |
T |
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