View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6213_low_6 (Length: 403)
Name: NF6213_low_6
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6213_low_6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 162 - 403
Target Start/End: Original strand, 44756279 - 44756517
Alignment:
| Q |
162 |
gtgatcattgggtgttaccgtttgaaaaatatggaagaagttgtgttactaatcgatgatttaaggttactttctggaatttctcgctgtagaatttgcc |
261 |
Q |
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| T |
44756279 |
gtgatcattgggtgttaccgtttgaaaaatatggaagaagttgtgttactaatcgatgatttaaggttactttctggaatttctcgctgtagaatttgcc |
44756378 |
T |
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| Q |
262 |
atgaagaagagtttgaaagctccaaagccttagaagcaccttgttcttgttctggaactgttaaggtaag-nnnnnnnnncacatgatcttttacttaac |
360 |
Q |
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| T |
44756379 |
atgaagaagagtttgaaagctccaaagccttagaagcaccttgttcttgttctggaactgttaaggtaagaaaaaaaaaacacatgatcttttacttaac |
44756478 |
T |
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| Q |
361 |
gtattaattaatcaactcttacaagcttttggttttattttct |
403 |
Q |
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| T |
44756479 |
gt----attaatcaactcttacaagcttatggttttattttct |
44756517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 44756130 - 44756206
Alignment:
| Q |
13 |
aatatcatacaagggcaatattggaactctctaaagttagttctttctttctttcgtatataaagccttggttcgtt |
89 |
Q |
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| T |
44756130 |
aatatcatacaagggcaatattggaactctctaaagttggttctttctttctttcgtatataaagccttggttcgtt |
44756206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 234 - 330
Target Start/End: Complemental strand, 39043855 - 39043759
Alignment:
| Q |
234 |
tctggaatttctcgctgtagaatttgccatgaagaagagtttgaaagctccaaagccttagaagcaccttgttcttgttctggaactgttaaggtaa |
330 |
Q |
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| T |
39043855 |
tctggattttctcgttgtagaatatgccatgaagaagaatttgaaagcttcaaaagcttagaagctccttgtgcatgttctggtacagttaaggtaa |
39043759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 21222943 - 21223001
Alignment:
| Q |
162 |
gtgatcattgggtgttaccgtttgaaaaatatggaagaagttgtgttactaatcgatga |
220 |
Q |
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| T |
21222943 |
gtgatcattgagtgttaccgtttgaaaaatatggaagaggttgtgttgctaatcgatga |
21223001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 21223014 - 21223050
Alignment:
| Q |
295 |
aagcaccttgttcttgttctggaactgttaaggtaag |
331 |
Q |
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| T |
21223014 |
aagcaccttgttcttgttctggaaatgttaaggtaag |
21223050 |
T |
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