View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6213_low_9 (Length: 384)
Name: NF6213_low_9
Description: NF6213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6213_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 40776374 - 40775998
Alignment:
| Q |
1 |
tagattattctgtttgttgctagagatagagaaagtgcatagctttttccatgtgtgttaggttgccactcattcctcatcaaatttcaaa-ggggaaat |
99 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40776374 |
tagatttttctgtttgttgctagagatagagaaagtgcatagctttttccatgtgtgttaggttgccactcattcctcatcaaatttcaaaaggggaaat |
40776275 |
T |
|
| Q |
100 |
ggacaagctagttcaactcaacgagattttacgtccacaaaaaattcatataattttcacgaaaaacaattatattgttgtgaaagataggatttacgtg |
199 |
Q |
| |
|
||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40776274 |
ggacaagctagttcaacgcaacgagatttcaagtccacaaaaaattcatataattttaacgaaaaataattatattgttgtgaaagataggatttacgtg |
40776175 |
T |
|
| Q |
200 |
tatttattttaacgcatcannnnnnncttcttgtgcaagtttaacgtatcatcggggatcggtaagaaaaaatagttgcggaaataaaagtcctcgaaaa |
299 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40776174 |
tatttattttaacgcatcatttttttcttcttgtgcaagtttaacgtatcatcggggatcggtaagaaaaaatagttgcggaaataaaagtcctcgaaaa |
40776075 |
T |
|
| Q |
300 |
tgctatgtactatcccaatag--------atatgtgtcattcactcttatcaaaaaagtttcattttaccaacttca |
368 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40776074 |
tgctatgtactatcccaatagtagaggatataagtgtcattcactcttaacaaaaaagtttcattttaccaacttca |
40775998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University