View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6214_high_2 (Length: 675)
Name: NF6214_high_2
Description: NF6214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6214_high_2 |
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| [»] scaffold0037 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 18 - 663
Target Start/End: Original strand, 8058787 - 8059428
Alignment:
| Q |
18 |
gatcaatcgattaagaacccctttattttattttttcctacattactctttctaattacattgtgaagaatttcaatttgttgtttagaagtcttggatt |
117 |
Q |
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| T |
8058787 |
gatcaatcgattaagaacccctttattttattttttcctacattactctttctaattacattgtgaagaatttcaatttgttgtttagaagtcttggatt |
8058886 |
T |
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| Q |
118 |
ttgtttcttacttttgagtaatttgtgactgtgagatgcaactatagtttaatttaatctgccaaatcacatgtgagatgtactctcaatgtttcaaaag |
217 |
Q |
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| T |
8058887 |
ttgtttcttacttttgagtaatttgtgactgtgagatgcaactatagtttaatttaatctgccaaatcacatgtgagatgtactctcaatgtttcaaaag |
8058986 |
T |
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| Q |
218 |
atatggagacaataatcttttattagaaattccatgctaaccaattttgtttttcattctactaatgtatctgacatgatactgtcataattaatnnnnn |
317 |
Q |
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| T |
8058987 |
atatggagacaataatcttttattagaaattccatgctgaccaattttgtttttcattctactaatgtatctgacatgatactgtcataattaataaaaa |
8059086 |
T |
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| Q |
318 |
nnnttgagtgatgagaattgagatggtcctactcttctatacaatacatctgtctaagagaaattgaagtgaatttgatatttcattttcttctctttac |
417 |
Q |
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| T |
8059087 |
aaattgagtgatgagaattgagatggtcctactcttctatacaatgcatctgtctaagagacattgaagtgaatttgatatttcattttcttctctttac |
8059186 |
T |
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| Q |
418 |
aagcctgtgaataagacatatcttgaatcaactttgtctcatgacagtcatatcctggattcctatggttgcaattatccctcatatatgtatgtagctc |
517 |
Q |
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| T |
8059187 |
aagcctgtgaataagacatatcttgaatcaacattgtctcatgacagtcatatcctggattcctatggttgcaattattcctccta----tatgtagatc |
8059282 |
T |
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| Q |
518 |
acacaatcataaatccaatttgtcattcatatcgtgaagctgacactagcaccgatggtttggagaatacaggttatgatttcgttgatggttgaactgt |
617 |
Q |
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| T |
8059283 |
acacaatcataaatccaatttgtcattcatatcgtgaagctgacactagcaccgatggtttggagaatacaggttgtgatttcgttgatggttgaactgt |
8059382 |
T |
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| Q |
618 |
ttgagtcttgttcgacgcacttaaatcaactattgttttttatatt |
663 |
Q |
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| T |
8059383 |
ttgagtcttgttcgacgcacttaaatcaactattgttttttatatt |
8059428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 263 - 455
Target Start/End: Complemental strand, 10428908 - 10428722
Alignment:
| Q |
263 |
tttgtttttcattctactaatgtatctgacatgatactgtcataattaatnnnnnnnn---ttgagtgatgagaattgagatggtcctactcttctatac |
359 |
Q |
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| T |
10428908 |
tttgtttttcattttactaatgtatccgacatgacactgtcgtaattaataaaaaaaaaaattgagtgatgagaattgagatgctcatactctttcata- |
10428810 |
T |
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| Q |
360 |
aatacatctgtctaagagaaattgaagtgaatttgatatttcattttcttctctttacaagcctgtgaataagacatatcttgaatcaactttgtc |
455 |
Q |
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| T |
10428809 |
--------tgtctaaaggacattgaagtgaatttgatatttcattttcttctctttacaagacgataaatgagacatatcttgaatcaacgttgtc |
10428722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 263 - 460
Target Start/End: Complemental strand, 34959 - 34767
Alignment:
| Q |
263 |
tttgtttttcattctactaatgtatctgacatgatactgtcataattaat----nnnnnnnnttgagtgatgagaattgagatggtcctactcttctata |
358 |
Q |
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| T |
34959 |
tttgtttttcattttactaatgtatccgacatgacacggtcgtaattaataaaaaaaaaaaattgagtgatgataattgagatggtcatactct------ |
34866 |
T |
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| Q |
359 |
caatacatctgtctaagagaaattgaagtgaatttgatatttcattttcttctctttacaagcctgtgaataagacatatcttgaatcaactttgtctca |
458 |
Q |
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| T |
34865 |
---ttcatatgtctaaaggacattgaagtgaatttgatatttcattttcttctctttacaagacgataaatgagacatatcttgaatcaacgttgtccca |
34769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 380 - 555
Target Start/End: Complemental strand, 34847 - 34661
Alignment:
| Q |
380 |
attgaagtgaatttgatatttcattttcttctctttacaagcctgtgaataagacatatcttgaatcaactttgtctcatgacag-----------tc-- |
466 |
Q |
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| T |
34847 |
attgaagtgaatttgatatttcattttcttctctttacaagacgataaatgagacatatcttgaatcaacgttgtcccatgccatgtttttccttttctg |
34748 |
T |
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| Q |
467 |
-atatcctggattcctatggttgcaattatccctcatatatgtatgtagctcacacaatca--taaatccaatttgtcattcatatcgtgaa |
555 |
Q |
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| T |
34747 |
tatgacctttattcatatggttgcaattaaccctcatataggta-gta----acacaatcacataaatccaatttgtcattcatatcgtgaa |
34661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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