View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6214_high_3 (Length: 299)
Name: NF6214_high_3
Description: NF6214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6214_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 5 - 284
Target Start/End: Original strand, 45735208 - 45735487
Alignment:
| Q |
5 |
atgaaactcatatataataatgggccatgtgcaaacatatatagaactttgttgttgcatgttgtcatttgtcaagtaccagattgtggtttttctttgc |
104 |
Q |
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| T |
45735208 |
atgaaactcatatataataatgggccatgtgcaaacatatatagaactttgttgttgcatgttgtcatttgtcaagtactagattgtggtttttctttgc |
45735307 |
T |
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| Q |
105 |
aaaacacaggttagattgggaagggattggaactccagcacaaatgcctaaaccagacagtcaacatcacctaaagaagcagaaggacacagccgcattt |
204 |
Q |
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| T |
45735308 |
aaaacacaggttagattgggaagggattggaactccagcacaaatgcctaaaccagacggtcaacatcacctaaagaagcagaaggacacagccgcattt |
45735407 |
T |
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| Q |
205 |
cctaattttgtgaagaaatcgttgcatgttgaccttatcagcgaacaactaaagcagaaggtttgtagtctgaagtagtt |
284 |
Q |
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| T |
45735408 |
cctaattttgtgaagaaatcgttgcatgttgaccttatcagcgaacaactaaaacagaaggtttatagtctgaagtagtt |
45735487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 45746481 - 45746726
Alignment:
| Q |
16 |
atataataatgggccatgtgcaaa-catatatagaactttgttgttgcatgttgtcatttgtcaagtaccagattgtggtttttctttgcaaaacacagg |
114 |
Q |
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| T |
45746481 |
atataataatcgtctatgtgcaaaacatatatagaactttgctgttacatgttgt-------caagtactagatggtggtttttctttgcaaaacacagg |
45746573 |
T |
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| Q |
115 |
ttagattgggaagggattggaactccagcacaaatgcctaaaccagacagtcaacatcacctaaagaagcagaaggacacagccgcatttcctaattttg |
214 |
Q |
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| T |
45746574 |
ttagattgggaagggattggaactccaacacaaatgcctaaaccagaaggtcaacatcacctaaagaagcagaaggatacagccgcatttcctaatttca |
45746673 |
T |
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| Q |
215 |
tgaagaaatcgttgcatgttgaccttatcagcgaacaactaaagcagaaggtt |
267 |
Q |
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| T |
45746674 |
tgaagaaatcgctgcatgttgaccctaccagcgaacaactgaagcagaaggtt |
45746726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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