View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6214_high_6 (Length: 237)
Name: NF6214_high_6
Description: NF6214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6214_high_6 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 5796553 - 5796789
Alignment:
| Q |
1 |
tcaacctaaccaaaattctttactcctcttacactttctttaaagcagcctaggagtttcattctctcggcattgacaatgagattgacactcgttatcc |
100 |
Q |
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| T |
5796553 |
tcaacctaaccaaaattctttactcctctcacactttctttaaagcaacctcggagtttcattctctcggcattgacagtgatattgacactcgttatcc |
5796652 |
T |
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| Q |
101 |
aaccacgatatttgttcctgatgacaaagcattcgcaaatgcttctgtttccaaaagatataactagcttagcgacgataacagaatattctcttgatac |
200 |
Q |
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| T |
5796653 |
aaccacgatatttgttcctgatgacaaagcattcgcaaatgcttctgtttccaaaagatataactcgcttagcaacgataacaaaatattctctcgatac |
5796752 |
T |
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| Q |
201 |
atgacacttgagaacaaaatatttgttattgtcgcta |
237 |
Q |
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| T |
5796753 |
atgacacttgagaacaaaatatttgttattgtcgcta |
5796789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 5778825 - 5779007
Alignment:
| Q |
1 |
tcaacctaaccaaaattctttactcctcttacactttctttaaagcagcctaggagtttcattctctcggcattgacaatgagattgacactcgttatcc |
100 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
5778825 |
tcaacctaaccaaaattctttactcatctcacactttctttaaagcagcctcggagtttcattctctcggcattgacagtgagattgacactcgttattc |
5778924 |
T |
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| Q |
101 |
aaccacgatatttgttcctgatgacaaagcattcgcaaatgcttctgtttccaaaagatataactagcttagcgacgataaca |
183 |
Q |
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| T |
5778925 |
aaccacggtatttgttccggatgacaaagcattcgcaaatgctactgtttccaaaagatatgagtcgcttagcgacgataaca |
5779007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 5796958 - 5796776
Alignment:
| Q |
1 |
tcaacctaaccaaaattctttactcctcttacactttctttaaagcagcctaggagtttcattctctcggcattgacaatgagattgacactcgttatcc |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5796958 |
tcaacctaaccaaaattctttactcctctcacactttctttaaagcagcctcggagtttcattctctcggcattgacagtgagattgacactcgttatcc |
5796859 |
T |
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| Q |
101 |
aaccacgatatttgttcctgatgacaaagcattcgcaaatgcttctgtttccaaaagatataactagcttagcgacgataaca |
183 |
Q |
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| T |
5796858 |
aaccacggtatttgtttctgataacaaagcattcgtagatgctactgtttccaaaagatacaagtcgcttagcgacaataaca |
5796776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 5817121 - 5817282
Alignment:
| Q |
21 |
tactcctcttacactttctttaaagcagcctaggagtttcattctctcggcattgacaatgagattgacactcgttatccaaccacgatatttgttcctg |
120 |
Q |
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| T |
5817121 |
tactcctctgacactttctttgaagcaacttcggtgtttcaatctcacgtcattgaccttgagattgacactcgtgatccaattacaatattt-ttcctg |
5817219 |
T |
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| Q |
121 |
atgacaaagcattcgcaaatgcttctgtttccaaaagatataactagcttagcgacgataaca |
183 |
Q |
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| T |
5817220 |
atgacaaagcattcgcagatgcttatgtttctaaaagatataagtcgcttagtgacgataaca |
5817282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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