View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6214_low_3 (Length: 437)
Name: NF6214_low_3
Description: NF6214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6214_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 34525260 - 34525552
Alignment:
| Q |
13 |
catcatcacacaaataaaa-cataatggaaatgaaaaaaggaactagtttccaatgatgcgagagtactcactagggaaatacagacttgactttctcaa |
111 |
Q |
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| T |
34525260 |
catcatcacacaaataaaaacataatggaaatgaaaaaaggaactagtttccaatgatgcgagagtactcactagggaaatacagacttgactttctcaa |
34525359 |
T |
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| Q |
112 |
tatccagagatttctggagagaacgaggaacccctagcttgatttgcaatttcatctgttcaaaactgacaccgggaatggaacctaaaccaaattaatc |
211 |
Q |
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| T |
34525360 |
tatccagagatttctggagagaacgaggaacccctagcttgatttgcaatttcatctgttcaaaactgacaccaggaatggaacctaaaccaaattaatc |
34525459 |
T |
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| Q |
212 |
acattagaagtttagaattgaagaaacaattttgaacatcaattgtcaaa--atatgttataaaaagagttatcaactatgaaatacaaaact |
302 |
Q |
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| T |
34525460 |
acattagaagtttagaattgaagaaacaattttgaacatcaattgtcaaaatatatgttataaaaagagttatcaactatgaaatacaaaact |
34525552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 76 - 300
Target Start/End: Original strand, 34521707 - 34521933
Alignment:
| Q |
76 |
gtactcactagggaaatacagacttgactttctcaatatccagagatttctggagagaacgaggaacccctagcttgatttgcaatttcatctgttcaaa |
175 |
Q |
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| T |
34521707 |
gtactcactacggaaatacagacttgactttctcaatatccagagcttgttggagagaatgaggaacccctagtttgatctgcaatttcatctgaccaaa |
34521806 |
T |
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| Q |
176 |
actgacaccgggaatggaacctaaaccaaattaatcacattagaagtttagaattgaagaaacaattttgaacatcaattgtcaaaata--tgttataaa |
273 |
Q |
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| T |
34521807 |
actgacaccaggaatggaacctaaaccaaattcatctcattagaaatttagaattgaagatacaattttgaacaacaattgtcaaaatatctggtttaaa |
34521906 |
T |
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| Q |
274 |
aagagttatcaactatgaaatacaaaa |
300 |
Q |
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| T |
34521907 |
aagagttatcaactatgaaatacaaaa |
34521933 |
T |
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