View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6214_low_5 (Length: 269)
Name: NF6214_low_5
Description: NF6214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6214_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 44788290 - 44788543
Alignment:
| Q |
1 |
gtttcacattttactgataaagggaatatatttggtatgacgtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagcc |
100 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44788290 |
gtttcacattttagtgataaaggaaatatatttggtatgacgtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagcc |
44788389 |
T |
|
| Q |
101 |
atacccttccctgctcgtagaactctagcatcgatctcaatctcctcctacaattacacaagtcatagggaatttttnnnnnnntaaactatctgtgata |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
44788390 |
atacccttccctgctcgtagaactttagcatcgatctcaatctcctcctacaattacacaagtcatagggaatttttttaaaaataaactaactgtgata |
44788489 |
T |
|
| Q |
201 |
tattcatcacaattcacacagatccaatatagaaaacccggaaaagaatctcct |
254 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
44788490 |
tattcatcacaattcacacagatccaatataggaaaccaggaaaagaatctcct |
44788543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 44786612 - 44786761
Alignment:
| Q |
1 |
gtttcacattttactgataaagggaatatatttggtatgacgtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagcc |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| |
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| T |
44786612 |
gtttcacattttactgataaagggtatatatttggtatgacgcccctgagcaaaaatttggccagtttttttcttccttaactccacgcttataacagct |
44786711 |
T |
|
| Q |
101 |
atacccttccctgctcgtagaactctagcatcgatctcaatctcctccta |
150 |
Q |
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||| ||| ||| ||||||| ||||| |||||||||||||||||||||| |
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| T |
44786712 |
atagtctttcctactcgtaggactctgccatcgatctcaatctcctccta |
44786761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 44791978 - 44792121
Alignment:
| Q |
1 |
gtttcacattttactgataaagggaatatatttggtatgacgtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagcc |
100 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||| || |||||||||| ||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
44791978 |
gtttcacattttacttacaaagggaatatatttggtatgacgcccttgagcaaaaacttgtccagtctttttcttcttgaactccacgcttacaacagct |
44792077 |
T |
|
| Q |
101 |
atacccttccctgctcgtagaactctagcatcgatctcaatctc |
144 |
Q |
| |
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| | |||| ||| ||||| |||||||||||| ||||||||||| |
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| T |
44792078 |
acagcctttcctattcgtaaaactctagcatcaatctcaatctc |
44792121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 44799934 - 44800105
Alignment:
| Q |
3 |
ttcacattttactgataaagggaatatatttggtatgacgtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagccat |
102 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |
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| T |
44799934 |
ttcacattttactgacaaagggaagatacttggtatgacgcccttgagcaaaaatttggcccgtctttttcttcctgaactctacgcttacaacagctat |
44800033 |
T |
|
| Q |
103 |
acccttccctgctcgtagaactctagcatcgatctcaatctcctcctacaattacacaagtcatagggaatt |
174 |
Q |
| |
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| | || ||| |||||||||| | ||| |||||||||||||||||| ||| || ||| ||||||||||| |
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| T |
44800034 |
agcatttcctactcgtagaaccttgttatcaatctcaatctcctcctaccattgcataagccatagggaatt |
44800105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 44783659 - 44783808
Alignment:
| Q |
1 |
gtttcacattttactgataaagggaatatatttggtatgacgtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagcc |
100 |
Q |
| |
|
||||||||||||||| ||| || || |||| ||||||||||||| |||||||||| ||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
44783659 |
gtttcacattttactagtaatggaaagatatgtggtatgacgtccatgagcaaaaacttggccagtctttttcttcctaaactccatgcttacaacagct |
44783758 |
T |
|
| Q |
101 |
atacccttccctgctcgtagaactctagcatcgatctcaatctcctccta |
150 |
Q |
| |
|
||| |||| ||| |||||||||| || || || ||||||||||| ||||| |
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| T |
44783759 |
ataacctttcctactcgtagaacccttgcttctatctcaatctcttccta |
44783808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 44803783 - 44803931
Alignment:
| Q |
3 |
ttcacattttactgataaagggaatatatttggtatgacgtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagccat |
102 |
Q |
| |
|
||||||||||||| ||||||||| |||||| ||| |||| || |||||||||| |||| | |||||||||||||| |||||||||||||||||||| | |
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| T |
44803783 |
ttcacattttactcctaaagggaagatattttgtaagacgcccttgagcaaaaacttggtccgtctttttcttcctcaactccacgcttacaacagctac |
44803882 |
T |
|
| Q |
103 |
acccttccctgctcgtagaactctagcatcgatctcaatctcctcctac |
151 |
Q |
| |
|
|||| ||| |||||||||| |||||||| |||||||||||||||||| |
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| T |
44803883 |
ggcctttcctactcgtagaaccctagcatcaatctcaatctcctcctac |
44803931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 44796902 - 44797022
Alignment:
| Q |
30 |
atttggtatgacgtccctgagcaaaaatttggccagtctttttcttcctgaactccacgcttacaacagccatacccttccctgctcgtagaactctagc |
129 |
Q |
| |
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|||| |||||||| || |||||||||| ||||||||| ||||||||||| ||||||||||||| |||||| | | |||| ||| || |||||| || | |
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| T |
44796902 |
attttgtatgacgcccttgagcaaaaacttggccagtttttttcttcctcaactccacgcttagaacagctacagcctttcctagtcttagaaccctggt |
44797001 |
T |
|
| Q |
130 |
atcgatctcaatctcctccta |
150 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
44797002 |
atcaatctcaatctcctccta |
44797022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 36681412 - 36681351
Alignment:
| Q |
1 |
gtttcacattttactgataaagggaatatatttggtatgacgtccctgagcaaaaatttggc |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
36681412 |
gtttcacattttactgataaagggaatatatttggtatgacgcccccgagcaaaaatttggc |
36681351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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