View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6214_low_6 (Length: 250)

Name: NF6214_low_6
Description: NF6214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6214_low_6
NF6214_low_6
[»] chr1 (9 HSPs)
chr1 (78-186)||(32591021-32591131)
chr1 (72-178)||(44065124-44065228)
chr1 (80-172)||(48420654-48420744)
chr1 (141-186)||(33475984-33476029)
chr1 (73-122)||(43019994-43020043)
chr1 (78-178)||(15475181-15475279)
chr1 (83-153)||(33476043-33476111)
chr1 (73-122)||(43020081-43020130)
chr1 (215-250)||(32591163-32591199)
[»] chr8 (6 HSPs)
chr8 (73-176)||(37371386-37371487)
chr8 (78-177)||(3554620-3554717)
chr8 (78-177)||(18608129-18608226)
chr8 (73-118)||(12101816-12101861)
chr8 (112-186)||(16822571-16822643)
chr8 (72-124)||(7371014-7371066)
[»] chr4 (6 HSPs)
chr4 (72-183)||(42398255-42398364)
chr4 (73-186)||(54983437-54983548)
chr4 (80-177)||(42381615-42381710)
chr4 (72-177)||(23693161-23693264)
chr4 (144-186)||(49320075-49320117)
chr4 (78-142)||(19545729-19545791)
[»] chr7 (7 HSPs)
chr7 (72-178)||(714547-714651)
chr7 (73-186)||(29540931-29541042)
chr7 (79-186)||(1464392-1464498)
chr7 (82-184)||(9246301-9246401)
chr7 (78-186)||(29693483-29693589)
chr7 (78-186)||(7813096-7813202)
chr7 (79-178)||(22701949-22702046)
[»] chr3 (5 HSPs)
chr3 (72-186)||(21967842-21967953)
chr3 (72-186)||(21990278-21990389)
chr3 (78-186)||(13475137-13475243)
chr3 (72-186)||(21082904-21083016)
chr3 (78-186)||(297863-297968)
[»] chr2 (6 HSPs)
chr2 (73-186)||(17822661-17822772)
chr2 (81-186)||(31554304-31554407)
chr2 (80-186)||(17873308-17873412)
chr2 (73-186)||(17827663-17827769)
chr2 (72-172)||(18921845-18921943)
chr2 (72-186)||(34467350-34467462)
[»] chr6 (1 HSPs)
chr6 (78-185)||(4965342-4965447)
[»] scaffold1993 (1 HSPs)
scaffold1993 (72-177)||(238-341)
[»] chr5 (2 HSPs)
chr5 (72-178)||(30840896-30841004)
chr5 (83-186)||(29531158-29531259)
[»] scaffold0092 (1 HSPs)
scaffold0092 (111-172)||(8828-8887)
[»] scaffold0013 (1 HSPs)
scaffold0013 (80-121)||(101823-101864)


Alignment Details
Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 32591021 - 32591131
Alignment:
Q  78 ttaaatattaatgaaaattattcgtacatcgacttatctacaaattatag--tgtcaaaacatataatgaaattatttatcaacttgacgtattttggtt 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32591021 ttaaatattaatgaaaattattcgtacatcgacttatctacaaattatatattgtcaaaacatataatgaaattatttatcaacttgacgtattttgatt 32591120  T
Q  176 tgtttgtatat 186  Q
    |||||||||||    
T  32591121 tgtttgtatat 32591131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 44065124 - 44065228
Alignment:
Q  72 aaattcttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtatttt 171  Q
    ||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||  || | || | ||||  |||||||| |||||||| | ||||||||    
T  44065124 aaatttttaaatattaatggaaattattcgtaaatcgatttatctacaaattat--tgacgaagcgtataccgaaattatctatcaactcggcgtatttt 44065221  T
Q  172 ggtttgt 178  Q
    |||||||    
T  44065222 ggtttgt 44065228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 48420744 - 48420654
Alignment:
Q  80 aaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttg 172  Q
    ||||||||||||||||| |||||||||||| ||||||| |||||||  | | |||  ||||||  |||||||||||||| |||||||||||||    
T  48420744 aaatattaatgaaaattgttcgtacatcgatttatctataaattat--tattaaattatataacaaaattatttatcaatttgacgtattttg 48420654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 33476029 - 33475984
Alignment:
Q  141 aatgaaattatttatcaacttgacgtattttggtttgtttgtatat 186  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||    
T  33476029 aatgaaattatttatcaactcgacgtattttggtttgcttgtatat 33475984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 43020043 - 43019994
Alignment:
Q  73 aattcttaaatattaatgaaaattattcgtacatcgacttatctacaaat 122  Q
    |||| |||||||||||||||||||||||||||||||| |||| |||||||    
T  43020043 aatttttaaatattaatgaaaattattcgtacatcgatttatttacaaat 43019994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 15475279 - 15475181
Alignment:
Q  78 ttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttggtttg 177  Q
    ||||||||| |||| ||||||||||| ||| | ||||||| |||||||  ||||||||| ||| |  |||||||||||||||| | | |||||| |||||    
T  15475279 ttaaatattcatgacaattattcgtatatcaatttatctataaattat--tgtcaaaacttatcacaaaattatttatcaactcggcatattttagtttg 15475182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 33476111 - 33476043
Alignment:
Q  83 tattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattattt 153  Q
    |||||||| |||||||| |||||| || ||||||| ||||||| |||  ||| ||||||||||||||||||    
T  33476111 tattaatggaaattattggtacattgatttatctataaattattgtg--aaagcatataatgaaattattt 33476043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 43020130 - 43020081
Alignment:
Q  73 aattcttaaatattaatgaaaattattcgtacatcgacttatctacaaat 122  Q
    |||| |||||| ||||||||||||||| ||||||||| |||| |||||||    
T  43020130 aatttttaaattttaatgaaaattatttgtacatcgatttatttacaaat 43020081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 250
Target Start/End: Original strand, 32591163 - 32591199
Alignment:
Q  215 tttcttattgattatatttatagt-acatataattga 250  Q
    |||||||||||||||||||||||| ||||||||||||    
T  32591163 tttcttattgattatatttatagtaacatataattga 32591199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 37371487 - 37371386
Alignment:
Q  73 aattcttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttg 172  Q
    |||| ||||||||||||  |||||||||||||||||| ||||||| |||||||  ||||||||||||||| ||||||||||||||| | |||||||||||    
T  37371487 aatttttaaatattaatagaaattattcgtacatcgatttatctataaattat--tgtcaaaacatataacgaaattatttatcaaatcgacgtattttg 37371390  T
Q  173 gttt 176  Q
    ||||    
T  37371389 gttt 37371386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 3554717 - 3554620
Alignment:
Q  78 ttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttggtttg 177  Q
    ||||||||||||| ||||||||||||| |||| |||||||||||||||  |||||||  |||||| ||||||||||||||||| |||  |||||||||||    
T  3554717 ttaaatattaatggaaattattcgtacgtcgatttatctacaaattat--tgtcaaagtatataacgaaattatttatcaactcgacaaattttggtttg 3554620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 177
Target Start/End: Original strand, 18608129 - 18608226
Alignment:
Q  78 ttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttggtttg 177  Q
    ||||||||| |||||||||||| ||||||| | |||||||||||||||  |||||||  |||||| |||||||||||||| || ||  ||||||||||||    
T  18608129 ttaaatattcatgaaaattattagtacatcaatttatctacaaattat--tgtcaaagtatataacgaaattatttatcatctcgaactattttggtttg 18608226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 12101861 - 12101816
Alignment:
Q  73 aattcttaaatattaatgaaaattattcgtacatcgacttatctac 118  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||    
T  12101861 aatttttaaatattaatgaaaattattcgtacatcgatttatctac 12101816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 16822643 - 16822571
Alignment:
Q  112 tatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttggtttgtttgtatat 186  Q
    ||||||||||||||  ||||||| |||||||  |||||||||||||||| ||| ||||||||||||  |||||||    
T  16822643 tatctacaaattat--tgtcaaagcatataacaaaattatttatcaactcgacctattttggtttgcctgtatat 16822571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 7371014 - 7371066
Alignment:
Q  72 aaattcttaaatattaatgaaaattattcgtacatcgacttatctacaaatta 124  Q
    ||||| |||||||||| |||||||||||||||||| || ||||||| ||||||    
T  7371014 aaatttttaaatattattgaaaattattcgtacattgatttatctataaatta 7371066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 42398255 - 42398364
Alignment:
Q  72 aaattcttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtatttt 171  Q
    ||||| ||||||||||||  |||| ||| ||| ||||| ||||||||||||||  |||||||| ||||||||||||||||||||||||| | | ||||||    
T  42398255 aaatttttaaatattaatagaaatgatttgtagatcgatttatctacaaatta--gtgtcaaagcatataatgaaattatttatcaactcggcatatttt 42398352  T
Q  172 ggtttgtttgta 183  Q
    ||||||||||||    
T  42398353 ggtttgtttgta 42398364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 186
Target Start/End: Complemental strand, 54983548 - 54983437
Alignment:
Q  73 aattcttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttg 172  Q
    |||| |||||||||||| ||||||||||||| ||||| ||||||| |||||||  | ||||| |||||||  |||||||||||| ||| || ||||||||    
T  54983548 aatttttaaatattaataaaaattattcgtatatcgatttatctaaaaattat--tatcaaagcatataacaaaattatttatcgactcgatgtattttg 54983451  T
Q  173 gtttgtttgtatat 186  Q
    |||||| |||||||    
T  54983450 gtttgtctgtatat 54983437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 177
Target Start/End: Complemental strand, 42381710 - 42381615
Alignment:
Q  80 aaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttggtttg 177  Q
    ||||||||||| |||||||| ||||||  | |||||||||||||||  ||||||| |||||||  |||||||||||||||| | |||| |||||||||    
T  42381710 aaatattaatggaaattatttgtacattaatttatctacaaattat--tgtcaaagcatataacaaaattatttatcaactcggcgtactttggtttg 42381615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 23693161 - 23693264
Alignment:
Q  72 aaattcttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtatttt 171  Q
    ||||| |||||||||||| |||||||| | |||||||| |||||||||||||||  ||||||| |||||||  ||||  ||||||||||  || |||| |    
T  23693161 aaatttttaaatattaataaaaattatacatacatcgatttatctacaaattat--tgtcaaagcatataacaaaatagtttatcaactccacatattct 23693258  T
Q  172 ggtttg 177  Q
    ||||||    
T  23693259 ggtttg 23693264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 49320075 - 49320117
Alignment:
Q  144 gaaattatttatcaacttgacgtattttggtttgtttgtatat 186  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  49320075 gaaattatttatcaacttagcgtattttggtttgtttgtatat 49320117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 19545791 - 19545729
Alignment:
Q  78 ttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataa 142  Q
    |||||||| |||| |||||| ||||| ||||| |||||||||||| ||  |||||||||||||||    
T  19545791 ttaaatataaatggaaattactcgtatatcgatttatctacaaataat--tgtcaaaacatataa 19545729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 714547 - 714651
Alignment:
Q  72 aaattcttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtatttt 171  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||| ||||| |  ||||||||||||| | ||||||||||||||||| |  |||||||    
T  714547 aaatttttaaatattaatgaaaattattcatacatcgatttatctaaaaattgt--tgtcaaaacatattacgaaattatttatcaactcggtgtatttt 714644  T
Q  172 ggtttgt 178  Q
    |||||||    
T  714645 ggtttgt 714651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 186
Target Start/End: Original strand, 29540931 - 29541042
Alignment:
Q  73 aattcttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttg 172  Q
    |||| ||||||||||||  |||||||| ||||||||  |||||||||||||||  |||||||  |||||||||||||||||||||||||| | |||||||    
T  29540931 aatttttaaatattaatagaaattatttgtacatcgggttatctacaaattat--tgtcaaagtatataatgaaattatttatcaacttgtcatattttg 29541028  T
Q  173 gtttgtttgtatat 186  Q
    |||| | |||||||    
T  29541029 gtttatctgtatat 29541042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 1464498 - 1464392
Alignment:
Q  79 taaatattaatgaaaa-ttattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttggtttg 177  Q
    |||||||||||||||| ||||| ||||||| | |||||||||||||||  ||||||| ||||||||||||| ||||||||||| ||| ||||||||||||    
T  1464498 taaatattaatgaaaaattatttgtacatcaatttatctacaaattat--tgtcaaagcatataatgaaataatttatcaactcgacatattttggtttg 1464401  T
Q  178 tttgtatat 186  Q
      |||||||    
T  1464400 catgtatat 1464392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 9246401 - 9246301
Alignment:
Q  82 atattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttggtttgtttg 181  Q
    ||||||||| || |||| ||| |||||| |||||||||||||||  ||||||| |||||||  ||||||||||| |||| ||| ||||||||||||| ||    
T  9246401 atattaatggaatttatccgttcatcgatttatctacaaattat--tgtcaaagcatataacaaaattatttattaactcgacatattttggtttgtctg 9246304  T
Q  182 tat 184  Q
    |||    
T  9246303 tat 9246301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 29693589 - 29693483
Alignment:
Q  78 ttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttggtttg 177  Q
    |||||||||||| |||| ||||| |||||| | ||||||| |||||||  | ||||| ||||| | ||||||||||||||||| ||| ||||| | ||||    
T  29693589 ttaaatattaatcaaaactattcatacatcaatttatctataaattat--tatcaaagcatatgacgaaattatttatcaactcgacatatttcgatttg 29693492  T
Q  178 tttgtatat 186  Q
    |||||||||    
T  29693491 tttgtatat 29693483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 7813202 - 7813096
Alignment:
Q  78 ttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttggtttg 177  Q
    ||||||||||||| |||||||||||||||  | || | || |||||||  ||||||| ||| ||| ||||||||||| ||||| ||| |||||| |||||    
T  7813202 ttaaatattaatggaaattattcgtacatgaatttttgtagaaattat--tgtcaaagcatctaacgaaattatttaacaactcgacatattttagtttg 7813105  T
Q  178 tttgtatat 186  Q
     ||||||||    
T  7813104 cttgtatat 7813096  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 22702046 - 22701949
Alignment:
Q  79 taaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttggtttgt 178  Q
    |||||||||||  |||||||| ||||||||| |||| |||||||| |  |||||||  |||||| |||||||||||| ||||  | |||| |||||||||    
T  22702046 taaatattaatttaaattatttgtacatcgatttatttacaaattct--tgtcaaaggatataacgaaattatttattaactcaatgtatattggtttgt 22701949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 21967953 - 21967842
Alignment:
Q  72 aaattcttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtatttt 171  Q
    ||||| ||| ||||||||  |||||||||||||||| | |||||||||||||||  ||||||| |||||||  |||||| ||||||||||| ||||||||    
T  21967953 aaatttttatatattaatagaaattattcgtacatcaatttatctacaaattat--tgtcaaa-catataacaaaattacttatcaacttggcgtatttt 21967857  T
Q  172 ggtttgtttgtatat 186  Q
    |||||||||||||||    
T  21967856 ggtttgtttgtatat 21967842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 21990389 - 21990278
Alignment:
Q  72 aaattcttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtatttt 171  Q
    ||||| ||| ||||||||  |||||||||||||||| | |||||||||||||||  ||||||| |||||||  |||||| ||||||||||| ||||||||    
T  21990389 aaatttttatatattaatagaaattattcgtacatcaatttatctacaaattat--tgtcaaa-catataacaaaattacttatcaacttggcgtatttt 21990293  T
Q  172 ggtttgtttgtatat 186  Q
    |||||||||||||||    
T  21990292 ggtttgtttgtatat 21990278  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 13475137 - 13475243
Alignment:
Q  78 ttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttggtttg 177  Q
    ||||| |||||| ||||||||||| ||||||| |||||||||||||||  ||| |||  |||||| ||||||| ||||||||| ||| || |||||||||    
T  13475137 ttaaacattaattaaaattattcgcacatcgatttatctacaaattat--tgttaaagtatataacgaaattacttatcaactcgacataatttggtttg 13475234  T
Q  178 tttgtatat 186  Q
    |||||||||    
T  13475235 tttgtatat 13475243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 21083016 - 21082904
Alignment:
Q  72 aaattcttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtatttt 171  Q
    ||||| |||||||| |||||||| ||||| |||||||| |||||||| ||||||  ||||| | |||||||  |||||||||||||| |   ||||||||    
T  21083016 aaatttttaaatatcaatgaaaactattcatacatcgatttatctacgaattat--tgtcatagcatataacaaaattatttatcaattctgcgtatttt 21082919  T
Q  172 ggtttgtttgtatat 186  Q
    ||||| |||||||||    
T  21082918 ggtttatttgtatat 21082904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 297968 - 297863
Alignment:
Q  78 ttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttggtttg 177  Q
    ||||| ||||||| |||||||||||||||||| |||| || ||||||   ||||||| |||||||  |||||||| ||||| | ||| ||||||||||||    
T  297968 ttaaacattaatggaaattattcgtacatcga-ttatgtataaattaa--tgtcaaagcatataacaaaattattcatcaaatcgacatattttggtttg 297872  T
Q  178 tttgtatat 186  Q
    | |||||||    
T  297871 tctgtatat 297863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 186
Target Start/End: Complemental strand, 17822772 - 17822661
Alignment:
Q  73 aattcttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttg 172  Q
    |||| |||||||||||||||||||||| ||||||| | |||||||||||||||  ||||||| ||||||| ||||| ||||||||| ||| | |||| |     
T  17822772 aatttttaaatattaatgaaaattatttgtacatctatttatctacaaattat--tgtcaaagcatataacgaaataatttatcaatttggcatattata 17822675  T
Q  173 gtttgtttgtatat 186  Q
    ||||||||||||||    
T  17822674 gtttgtttgtatat 17822661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 31554304 - 31554407
Alignment:
Q  81 aatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttggtttgttt 180  Q
    |||||||||||||| ||||||||||||   ||||||| |||||||  |||||||||| ||||  |||||||||||||||| ||| |||||||||||||||    
T  31554304 aatattaatgaaaactattcgtacatcagtttatctataaattat--tgtcaaaacaaataacaaaattatttatcaactcgacatattttggtttgttt 31554401  T
Q  181 gtatat 186  Q
    ||||||    
T  31554402 gtatat 31554407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 17873412 - 17873308
Alignment:
Q  80 aaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttggtttgtt 179  Q
    ||||||||||| |||||||| ||| ||||| |||| ||||||||||  ||||  | ||||||| |||||||| |||||||||||  |||||||||||||     
T  17873412 aaatattaatggaaattatttgtaaatcgatttatatacaaattat--tgtcggagcatataacgaaattatctatcaacttgatatattttggtttgtc 17873315  T
Q  180 tgtatat 186  Q
    |||||||    
T  17873314 tgtatat 17873308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 186
Target Start/End: Complemental strand, 17827769 - 17827663
Alignment:
Q  73 aattcttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttg 172  Q
    |||| ||||||||||||  ||||||||| |||||||| |     |||||||||  ||||||||||||||| |||||||||||||||||||   |||||||    
T  17827769 aatttttaaatattaatcgaaattattcctacatcgatt-----acaaattat--tgtcaaaacatataacgaaattatttatcaacttggtatattttg 17827677  T
Q  173 gtttgtttgtatat 186  Q
    | |||| |||||||    
T  17827676 gcttgtctgtatat 17827663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 172
Target Start/End: Original strand, 18921845 - 18921943
Alignment:
Q  72 aaattcttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtatttt 171  Q
    ||||| |||||||||||| ||||||||   ||||| || ||||||| |||||||  | |||||||||||||  |||||||||||||||  ||||||||||    
T  18921845 aaatttttaaatattaataaaaattatgtatacattgatttatctataaattat--tatcaaaacatataacaaaattatttatcaacccgacgtatttt 18921942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 34467350 - 34467462
Alignment:
Q  72 aaattcttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtatttt 171  Q
    ||||| ||||||||||||  || ||||| ||||||| | ||||||||||||| |  ||| ||||||||| | |||||  |||||||||| ||| ||||||    
T  34467350 aaatttttaaatattaatcgaatttatttgtacatcaatttatctacaaattct--tgtaaaaacatatgacgaaatattttatcaactcgacatatttt 34467447  T
Q  172 ggtttgtttgtatat 186  Q
    | ||||| |||||||    
T  34467448 gatttgtctgtatat 34467462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 4965342 - 4965447
Alignment:
Q  78 ttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttggtttg 177  Q
    ||||||||||||| ||||||||||| |||||| |||||||||||||||  |||||||  ||||||  ||||||||||||||||  || ||||||||||||    
T  4965342 ttaaatattaatggaaattattcgtgcatcgatttatctacaaattat--tgtcaaagtatataacaaaattatttatcaactcaacatattttggtttg 4965439  T
Q  178 tttgtata 185  Q
     |||||||    
T  4965440 cttgtata 4965447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1993 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 238 - 341
Alignment:
Q  72 aaattcttaaatattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtatttt 171  Q
    ||||| ||||||||||||| || |||||||| |||||| |||||||||||||||  |||||||  |||||| |||||||||||| |||| ||| ||||||    
T  238 aaatttttaaatattaatggaatttattcgttcatcgatttatctacaaattat--tgtcaaactatataacgaaattatttattaactcgacatatttt 335  T
Q  172 ggtttg 177  Q
    | ||||    
T  336 gatttg 341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 30840896 - 30841004
Alignment:
Q  72 aaattcttaaatattaatgaaaattattcgtaca----tcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgta 167  Q
    ||||| ||||||||||||||||||||||||||||    |||| |||  || |||||||  |||| ||||||||||  ||||||||||||||||||| |||    
T  30840896 aaatttttaaatattaatgaaaattattcgtacacacatcgatttacgtataaattat--tgtcgaaacatataacaaaattatttatcaacttgatgta 30840993  T
Q  168 ttttggtttgt 178  Q
    |||||||||||    
T  30840994 ttttggtttgt 30841004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 29531158 - 29531259
Alignment:
Q  83 tattaatgaaaattattcgtacatcgacttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttggtttgtttgt 182  Q
    ||||||| ||||||||  ||||||  | ||||||| |||||||  |||| ||||||||||  ||||||||||||||||| | ||||||| |||||| |||    
T  29531158 tattaataaaaattatcggtacattaatttatctataaattat--tgtcgaaacatataacaaaattatttatcaacttaatgtattttagtttgtctgt 29531255  T
Q  183 atat 186  Q
    ||||    
T  29531256 atat 29531259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 8887 - 8828
Alignment:
Q  111 ttatctacaaattatagtgtcaaaacatataatgaaattatttatcaacttgacgtattttg 172  Q
    |||||||||||||||  ||||||| ||||||| ||||||||||||| | |||||||||||||    
T  8887 ttatctacaaattat--tgtcaaagcatataacgaaattatttatctatttgacgtattttg 8828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 101864 - 101823
Alignment:
Q  80 aaatattaatgaaaattattcgtacatcgacttatctacaaa 121  Q
    ||||||||||| |||||||||||||||||| |||||||||||    
T  101864 aaatattaatggaaattattcgtacatcgatttatctacaaa 101823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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