View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6214_low_9 (Length: 205)
Name: NF6214_low_9
Description: NF6214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6214_low_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 10367505 - 10367688
Alignment:
| Q |
23 |
tgttgctagcatacatgatggaataatcattgttggaggaaaatcatgtattggcaacgtagtaggtccaattaaagaacacaatgaggttgnnnnnnnn |
122 |
Q |
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| T |
10367505 |
tgttgctagcataaatgatggaataatcattgttggaggaaaatcaaatattggcaaagtagtaggtccaattaaagaacacaatgaggttgtttttttc |
10367604 |
T |
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| Q |
123 |
agtgctgtcacaaaaacatggcataatatgccatctatgaaa-attctagagctcttcctttattaggagtcattgaggattct |
205 |
Q |
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| T |
10367605 |
aatgctgtcacaaaaacttggcataatatgccatctatgaaatattcgagagctcttcctttattagtagtcattgaggattct |
10367688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 10379166 - 10379279
Alignment:
| Q |
1 |
tcaaaggaaggtccatgttctctgttgctagcatacatgatggaataatcattgttggaggaaaatcatgtattggcaacgtagtaggtccaattaaaga |
100 |
Q |
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| T |
10379166 |
tcaaaggaaggtccatgttctctgttgctagcataaatgatggaataatcattgttggaggaaaatcaaatattggcaaagtagtaggtccaattaaaga |
10379265 |
T |
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| Q |
101 |
acacaatgaggttg |
114 |
Q |
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| T |
10379266 |
acacaatgaggttg |
10379279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 43657979 - 43658052
Alignment:
| Q |
130 |
tcacaaaaacatggcataatatgccatctat-gaaaattctagagctcttcctttattaggagtcattgaggat |
202 |
Q |
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| T |
43657979 |
tcacaaaatcatggcataatatgccatctatggaatatgctagatatcttcccgtgttaggagtcactgaggat |
43658052 |
T |
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