View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6216_high_1 (Length: 719)
Name: NF6216_high_1
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6216_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 1e-67; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 484 - 691
Target Start/End: Original strand, 29476163 - 29476372
Alignment:
| Q |
484 |
gctttgaatcaaaatcagatggtaacttatctgaaggatatctccaccattccaatacttttaatctttttggaagatacttgggagctttcgagaaatg |
583 |
Q |
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| T |
29476163 |
gctttgaatcaaaatcagatggtaacttttccgaaggatatctcagccattctaatacttttaaactgtttggaagatacttgggagctgtggagaaatg |
29476262 |
T |
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| Q |
584 |
acagtttctaata--agtattctgaggtttgccatctcctcaaaggcctctccatcccattctattgcttcttcatcttcaattaagggggaatctagat |
681 |
Q |
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||| ||||||||| |||||| ||||||||| |||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29476263 |
acattttctaataatagtattttgaggtttggcatctccttaaaagcctttccatcccattctattgcttcttcatcttcaattaagggggaatctaagt |
29476362 |
T |
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| Q |
682 |
gtatgatttc |
691 |
Q |
| |
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|||||||||| |
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| T |
29476363 |
gtatgatttc |
29476372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 39 - 140
Target Start/End: Original strand, 29528980 - 29529081
Alignment:
| Q |
39 |
ttgaaaggtttccaccttccaattaatcgattgaaagaagggctcagagcatgacataacaggccaactacacttgacataagcccaactagtttccacg |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
29528980 |
ttgaaaggtttccaccttccaattaatcgattgaaagaagggctcagagcataacataacaggccaactacacttgacataagcccaactactctccacg |
29529079 |
T |
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| Q |
139 |
tc |
140 |
Q |
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|| |
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| T |
29529080 |
tc |
29529081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 28183652 - 28183514
Alignment:
| Q |
22 |
ctacatataaaaagacattgaaaggtttccaccttccaattaatcgattgaaagaagggctcagagcatgacataacaggccaactacacttgacataag |
121 |
Q |
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| T |
28183652 |
ctacatagagaaagaccttgaaaggattccaccttccaaataatcgattgaaagaagggcttagagcataacataacaagccaacaatacatgacataaa |
28183553 |
T |
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| Q |
122 |
cccaactagtttccacgtcgtcttggcatgaaataccct |
160 |
Q |
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|||| || | |||| ||||||| ||| ||||| ||||| |
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| T |
28183552 |
accaattactctccaagtcgtctcggcttgaaacaccct |
28183514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 29612479 - 29612391
Alignment:
| Q |
48 |
ttccaccttccaattaatcgattgaaagaagggctcagagcatgacataacaggccaactacacttgacataagcccaactagtttcca |
136 |
Q |
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| T |
29612479 |
ttccatcttccaattaaacgattgaaagaagggctctgagcataacacaataggccaaatacacttgacacaaggccaactagtctcca |
29612391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 29475320 - 29475394
Alignment:
| Q |
55 |
ttccaattaatcgattgaaagaagggctcagagcatgacataacaggccaactacacttgacataagcccaacta |
129 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| | ||| || |||| |||||||||||| ||||||| |
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| T |
29475320 |
ttccaattaatcgattgaaagaagggctcagagcataacaaaccagaccgactatacttgacataaggccaacta |
29475394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 29526960 - 29527044
Alignment:
| Q |
21 |
actacatataaaaagacattgaaaggtttccaccttccaattaatcgattgaaagaagggctcagagcatgacataacaggccaa |
105 |
Q |
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| T |
29526960 |
actacatagagaaagaccttgaaaggattccaccttccaaataatcgattgaaagaagggcctagagcataacttaacaagccaa |
29527044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 29524683 - 29524621
Alignment:
| Q |
55 |
ttccaattaatcgattgaaagaagggctcagagcatgacataacaggccaactacacttgaca |
117 |
Q |
| |
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||||||| || |||||||||||| ||||| |||||| |||||| ||||| ||||||||||||| |
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| T |
29524683 |
ttccaatgaaacgattgaaagaatggctctgagcattacataataggcctactacacttgaca |
29524621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 583
Target Start/End: Complemental strand, 31907081 - 31906970
Alignment:
| Q |
472 |
atatgacaagttgctttgaatcaaaatcagatggtaacttatctgaaggatatctccaccattccaatacttttaatctttttggaagatacttgggagc |
571 |
Q |
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| T |
31907081 |
atatggcaagtttctttggattaaaatcatatggaaaatattctgaaggataattccaccattccactactcttaaactatttggaagatgtttgggtcc |
31906982 |
T |
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| Q |
572 |
tttcgagaaatg |
583 |
Q |
| |
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||| |||||||| |
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| T |
31906981 |
tttggagaaatg |
31906970 |
T |
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