View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6216_high_13 (Length: 320)
Name: NF6216_high_13
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6216_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 49272706 - 49272570
Alignment:
| Q |
1 |
gctgatagcaatataaagatagcgataaatgttaaaaacttctcattttgtttaaagctgattttgacaaggtgtatgattagttgagtgggattgtcta |
100 |
Q |
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| T |
49272706 |
gctgatagcaatataaagatagcaataaatgttaaaaacttctcattttgtttaaagctgattttgacaaggtgtatgattagttgagtgggattgtcta |
49272607 |
T |
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| Q |
101 |
cattatgttacagtgaaaatgaagagtaaacaggcta |
137 |
Q |
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| T |
49272606 |
cattatgttacagtgaaaatgaagagtaaacaggcta |
49272570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 137 - 288
Target Start/End: Complemental strand, 49272534 - 49272383
Alignment:
| Q |
137 |
aacgttaaacactgatgtatctgtttatgccacctaccacatatacatagactaatttgacaacaaattaaaatttgtttatagtaaaatgtttgagnnn |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49272534 |
aacgttaaacactgatgtatctgtttatgccacctaccacatatacatagactaatttgacaacaaattaaaatttgtttatagtaaaatgtttgagttt |
49272435 |
T |
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| Q |
237 |
nnnnccaataattttatcttgtattgattgtttcttttcaatgattagcaga |
288 |
Q |
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| T |
49272434 |
ttttccaataattttatcttgtattgattgtttcttttcaatgattagcaga |
49272383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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