View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6216_high_24 (Length: 245)
Name: NF6216_high_24
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6216_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 49096690 - 49096464
Alignment:
| Q |
8 |
cagcacagacacacaccggtcaacaaatctcaatctgacacacgcacatgctaatttcatttcattgcataaattacaatatcatgcacattcaatcatc |
107 |
Q |
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| T |
49096690 |
cagcacagacacacaccggtcaacaaatctcaatctgacacacgcacatgctaatttcatttcattgcataaattacaatatcatgcacattcaataatc |
49096591 |
T |
|
| Q |
108 |
aatatactattccaataatattccattgactatactcttccttaat------nnnnnnnnnnnnctcattcataccttccccttcctgtactcaaaccaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49096590 |
aatatactattccaataatattccattgactatactcttccttaattatatatatatatatatactcattcataccttccccttcctgtactcaaaccaa |
49096491 |
T |
|
| Q |
202 |
aaccaacttctatcaacaatcaacaacc |
229 |
Q |
| |
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|| ||||||||||||||||||||||||| |
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| T |
49096490 |
aa-caacttctatcaacaatcaacaacc |
49096464 |
T |
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