View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6216_high_25 (Length: 242)

Name: NF6216_high_25
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6216_high_25
NF6216_high_25
[»] scaffold0140 (1 HSPs)
scaffold0140 (16-230)||(19208-19423)
[»] chr5 (16 HSPs)
chr5 (99-172)||(38120012-38120085)
chr5 (97-172)||(33718372-33718447)
chr5 (104-158)||(25027127-25027181)
chr5 (103-185)||(35704790-35704872)
chr5 (99-150)||(10295699-10295750)
chr5 (102-183)||(10843214-10843295)
chr5 (99-172)||(17093088-17093161)
chr5 (103-172)||(35701594-35701663)
chr5 (99-172)||(4648800-4648877)
chr5 (99-185)||(9684608-9684694)
chr5 (99-133)||(25598586-25598620)
chr5 (100-181)||(32824831-32824913)
chr5 (104-158)||(38302182-38302236)
chr5 (103-185)||(43496717-43496799)
chr5 (99-139)||(1935234-1935274)
chr5 (99-131)||(6620471-6620503)
[»] chr3 (26 HSPs)
chr3 (99-183)||(3537386-3537470)
chr3 (100-183)||(54126440-54126523)
chr3 (99-172)||(43237481-43237554)
chr3 (99-172)||(47789263-47789336)
chr3 (99-183)||(52620652-52620736)
chr3 (100-171)||(49861028-49861099)
chr3 (100-158)||(44411972-44412030)
chr3 (99-144)||(38456486-38456531)
chr3 (100-172)||(30121340-30121412)
chr3 (98-183)||(5939597-5939682)
chr3 (99-144)||(39499417-39499462)
chr3 (99-183)||(44400879-44400963)
chr3 (101-158)||(55445114-55445171)
chr3 (99-183)||(34280667-34280751)
chr3 (100-158)||(3042946-3043004)
chr3 (104-158)||(41099559-41099613)
chr3 (129-183)||(54372423-54372477)
chr3 (99-133)||(55439815-55439849)
chr3 (99-180)||(21777457-21777536)
chr3 (100-133)||(47789622-47789655)
chr3 (99-183)||(48908709-48908793)
chr3 (99-144)||(53620160-53620205)
chr3 (99-131)||(1132757-1132789)
chr3 (100-183)||(37673971-37674054)
chr3 (100-172)||(41961795-41961867)
chr3 (103-183)||(50534928-50535008)
[»] chr6 (7 HSPs)
chr6 (100-158)||(26574213-26574271)
chr6 (99-158)||(29241650-29241709)
chr6 (100-144)||(4909698-4909742)
chr6 (99-133)||(24734758-24734792)
chr6 (100-133)||(5825562-5825595)
chr6 (104-172)||(24735073-24735141)
chr6 (100-183)||(32719117-32719200)
[»] scaffold0028 (1 HSPs)
scaffold0028 (99-172)||(35272-35345)
[»] chr7 (16 HSPs)
chr7 (99-172)||(34651870-34651943)
chr7 (100-172)||(7666982-7667054)
chr7 (99-185)||(3591840-3591924)
chr7 (100-172)||(28437359-28437431)
chr7 (100-183)||(38505162-38505245)
chr7 (99-185)||(41471621-41471707)
chr7 (99-185)||(42112775-42112861)
chr7 (100-185)||(23465818-23465903)
chr7 (100-144)||(3658329-3658373)
chr7 (100-144)||(38236011-38236055)
chr7 (94-184)||(22394331-22394420)
chr7 (99-181)||(33871777-33871859)
chr7 (100-158)||(43189062-43189120)
chr7 (99-183)||(4057963-4058047)
chr7 (99-131)||(33113460-33113492)
chr7 (102-150)||(47275821-47275869)
[»] chr4 (21 HSPs)
chr4 (100-185)||(42650810-42650895)
chr4 (99-172)||(20534119-20534191)
chr4 (104-172)||(17622295-17622363)
chr4 (105-172)||(13270174-13270241)
chr4 (100-158)||(32060851-32060909)
chr4 (99-144)||(22845049-22845094)
chr4 (99-144)||(24280130-24280175)
chr4 (99-156)||(41844642-41844699)
chr4 (100-183)||(29114061-29114144)
chr4 (100-172)||(32648822-32648894)
chr4 (100-183)||(38136652-38136735)
chr4 (99-150)||(3126829-3126880)
chr4 (99-150)||(31530236-31530287)
chr4 (99-158)||(38366232-38366290)
chr4 (100-181)||(35959349-35959430)
chr4 (99-133)||(45899512-45899546)
chr4 (98-131)||(31340657-31340690)
chr4 (99-172)||(32948343-32948416)
chr4 (99-183)||(33500701-33500785)
chr4 (100-183)||(30198589-30198672)
chr4 (100-144)||(37756537-37756581)
[»] chr1 (28 HSPs)
chr1 (99-172)||(33991733-33991806)
chr1 (100-185)||(49102793-49102878)
chr1 (99-182)||(7915741-7915824)
chr1 (100-185)||(39508946-39509031)
chr1 (100-185)||(50587211-50587295)
chr1 (100-172)||(45565320-45565392)
chr1 (100-147)||(2925755-2925802)
chr1 (100-158)||(1688035-1688093)
chr1 (100-158)||(32300260-32300318)
chr1 (100-158)||(38795170-38795228)
chr1 (99-172)||(896314-896386)
chr1 (99-172)||(1523786-1523859)
chr1 (99-172)||(15464002-15464075)
chr1 (99-183)||(37649433-37649517)
chr1 (100-185)||(50476706-50476791)
chr1 (100-143)||(32299323-32299366)
chr1 (99-158)||(42161871-42161929)
chr1 (99-158)||(43571786-43571845)
chr1 (100-158)||(27500189-27500247)
chr1 (99-177)||(50247782-50247860)
chr1 (99-137)||(51246735-51246773)
chr1 (100-133)||(9595791-9595824)
chr1 (99-136)||(34154501-34154538)
chr1 (100-133)||(39179282-39179315)
chr1 (100-181)||(43036141-43036222)
chr1 (104-172)||(7401388-7401456)
chr1 (100-183)||(24369081-24369164)
chr1 (99-131)||(41432579-41432611)
[»] chr8 (11 HSPs)
chr8 (100-158)||(33230864-33230922)
chr8 (99-183)||(12506013-12506097)
chr8 (100-172)||(36906380-36906452)
chr8 (128-185)||(42589704-42589761)
chr8 (100-172)||(34148398-34148469)
chr8 (101-183)||(79439-79521)
chr8 (104-158)||(1111059-1111112)
chr8 (99-133)||(1941867-1941901)
chr8 (108-158)||(3404399-3404449)
chr8 (102-158)||(21537117-21537174)
chr8 (101-181)||(23932367-23932447)
[»] chr2 (23 HSPs)
chr2 (100-172)||(31550079-31550151)
chr2 (102-185)||(7310220-7310303)
chr2 (100-185)||(15803350-15803435)
chr2 (99-172)||(8990780-8990853)
chr2 (103-172)||(19383069-19383138)
chr2 (102-183)||(40212183-40212264)
chr2 (99-183)||(43572361-43572445)
chr2 (99-133)||(18826048-18826082)
chr2 (99-181)||(26599072-26599154)
chr2 (99-137)||(42644871-42644909)
chr2 (103-172)||(10165604-10165673)
chr2 (99-183)||(13018295-13018379)
chr2 (100-133)||(14008147-14008180)
chr2 (99-136)||(16813507-16813544)
chr2 (99-136)||(16852786-16852823)
chr2 (99-172)||(25955651-25955724)
chr2 (152-185)||(36030971-36031004)
chr2 (99-172)||(36567095-36567168)
chr2 (99-144)||(40357676-40357721)
chr2 (99-144)||(44137296-44137341)
chr2 (99-183)||(31584584-31584668)
chr2 (102-158)||(31899176-31899232)
chr2 (108-172)||(44020526-44020590)
[»] scaffold0717 (1 HSPs)
scaffold0717 (99-158)||(1784-1843)
[»] scaffold0636 (1 HSPs)
scaffold0636 (100-158)||(8596-8654)
[»] scaffold1562 (1 HSPs)
scaffold1562 (103-172)||(332-400)
[»] scaffold1158 (1 HSPs)
scaffold1158 (103-172)||(2193-2261)
[»] scaffold0952 (1 HSPs)
scaffold0952 (99-172)||(3486-3559)


Alignment Details
Target: scaffold0140 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 19208 - 19423
Alignment:
Q  16 tatgtttccctttctcccctttcctccaaagccctcccgtccctttcccttctgactcctaaataaataaagtctaagttttgtaggctttgtttgggag 115  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  19208 tatgtttctctttctcccctttcctccaaagccctcccgtccctttcccttctaactcctaaattaataaagtctaagttttgtaggctttgtttgggag 19307  T
Q  116 ttttgaggggaagggaggagagagctttgaggggtgggaaat-aaagggaaaaatggagaaatctttcacannnnnnngaaagactattataacaacata 214  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       |||||| |||||||||||||||    
T  19308 ttttgaggggaagggaggagagagctttgaggggtgggaaataaaagggaaaaatggagaaatctttcacatttttttgaaagagtattataacaacata 19407  T
Q  215 gatttaattgaagaat 230  Q
    ||||||||||||||||    
T  19408 gatttaattgaagaat 19423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 38120012 - 38120085
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||| |  ||||||||||    
T  38120012 taggctttgtttgggagtttggaggggaagggaggggagagctttggggggttggaaatatatagaaaaatgga 38120085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 172
Target Start/End: Complemental strand, 33718447 - 33718372
Alignment:
Q  97 tgtaggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||||||||||||| |||||||||||| ||||| |||||| ||||| ||||||| |  ||||||||||    
T  33718447 tgtaggctttgtttgggagtttggaggggaagggatgagagggctttgtggggttggaaatatatagaaaaatgga 33718372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 25027181 - 25027127
Alignment:
Q  104 tttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    ||||||||||||||| |||||||||||||| ||| |||||||||||| |||||||    
T  25027181 tttgtttgggagtttggaggggaagggaggggagggctttgaggggttggaaata 25027127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 185
Target Start/End: Complemental strand, 35704872 - 35704790
Alignment:
Q  103 ctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttcaca 185  Q
    |||||||| | ||||||||||||| |||| | ||||| |||| ||||| ||||||| ||| |||||| |||||||||||||||    
T  35704872 ctttgttttgaagttttgaggggaggggaagggagagttttggggggttggaaatataggaaaaaatagagaaatctttcaca 35704790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 10295750 - 10295699
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggt 150  Q
    |||||||||||||||||||| |||||||||||||| ||| |||||| |||||    
T  10295750 taggctttgtttgggagtttggaggggaagggaggggagggctttggggggt 10295699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 10843295 - 10843214
Alignment:
Q  102 gctttgtttgggagttttgaggggaagg-gaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    ||||||||||||||||| |||||||||| ||||| || |||||||||||||  |||||   |||||||| |||||||||||||    
T  10843295 gctttgtttgggagtttggaggggaaggagaggaaag-gctttgaggggtgcaaaatatgaggaaaaatagagaaatctttca 10843214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 17093161 - 17093088
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||||||||||| ||||||||||||||  ||  ||||| ||||| ||||||| |  ||||||||||    
T  17093161 taggctttgtttgggagtttggaggggaagggagggaaggtctttggggggttggaaatatatagaaaaatgga 17093088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 35701663 - 35701594
Alignment:
Q  103 ctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||||||| ||||||| |||||| ||| |||| ||||||| ||||||| |  ||||||||||    
T  35701663 ctttgtttgggagtttggaggggacgggaggggagggcttcgaggggttggaaatatatagaaaaatgga 35701594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 4648800 - 4648877
Alignment:
Q  99 taggctttgtttgggagttttgagg----ggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||||||||||| ||||    |||||||||| ||| |||||||||||| ||||||| |  ||||||||||    
T  4648800 taggctttgtttgggagtttggaggggaaggaagggaggggagggctttgaggggttggaaatatatagaaaaatgga 4648877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 9684608 - 9684694
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttcaca 185  Q
    |||||||||||||||||||| |||||||||||| | ||  |||| |  |||| ||||||| |||| |||||||  ||||||| ||||    
T  9684608 taggctttgtttgggagtttggaggggaagggaagggaaggcttaggagggttggaaatataggggaaaatgggaaaatcttccaca 9684694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 25598586 - 25598620
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggagg 133  Q
    |||||||||||||||||||| ||||||||||||||    
T  25598586 taggctttgtttgggagtttggaggggaagggagg 25598620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 32824913 - 32824831
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtggg-aaataaagggaaaaatggagaaatcttt 181  Q
    ||||||||||||||||||   |||||| |||| | ||| |||||||||| |||| ||||| ||||  ||||||||||||||||    
T  32824913 aggctttgtttgggagttcacaggggaggggaagggagggctttgagggatgggaaaatatagggggaaatggagaaatcttt 32824831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 38302182 - 38302236
Alignment:
Q  104 tttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    ||||||||||||||| |||||||||||||| ||| |||||| | ||| |||||||    
T  38302182 tttgtttgggagtttggaggggaagggaggggagggctttgggaggttggaaata 38302236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 185
Target Start/End: Original strand, 43496717 - 43496799
Alignment:
Q  103 ctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttcaca 185  Q
    ||||||||| |||||| ||||||| |||| ||||| | |||| ||| |||||||||  |||  |||| |||||||||||||||    
T  43496717 ctttgtttgcgagtttggaggggaggggatgagagggttttgggggttgggaaatatggggggaaatagagaaatctttcaca 43496799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 1935274 - 1935234
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagag 139  Q
    ||||||||||||| |||||| |||||||||||||| |||||    
T  1935274 taggctttgtttgcgagtttggaggggaagggaggggagag 1935234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 6620503 - 6620471
Alignment:
Q  99 taggctttgtttgggagttttgaggggaaggga 131  Q
    ||||||||||||| |||||||||||||||||||    
T  6620503 taggctttgtttgcgagttttgaggggaaggga 6620471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 3537470 - 3537386
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    |||||||||||||||||||| |||||||||||||| ||  |||||||||||||| |||||   || |||||| ||||||||||||    
T  3537470 taggctttgtttgggagtttggaggggaagggaggggaaggctttgaggggtggaaaatatgagggaaaatgaagaaatctttca 3537386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 54126523 - 54126440
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    |||||||||||||||| ||  |||||| |||| | |||||||||| ||||||||||||| |||| || ||||||||||||||||    
T  54126523 aggctttgtttgggagattgaaggggaggggaagggagagctttggggggtgggaaatataggggaacatggagaaatctttca 54126440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 43237554 - 43237481
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||||||||||| |||||||||||||||||| | |||| ||||| ||||||| |  ||||||||||    
T  43237554 taggctttgtttgggagtttggaggggaagggaggagagggatttggggggttggaaatatatagaaaaatgga 43237481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 47789263 - 47789336
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||||||||||| |||||||||||||| ||| |||||| ||||| ||||||| |  ||||||||||    
T  47789263 taggctttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaatgga 47789336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 52620652 - 52620736
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    |||||||||||||||||||| ||||||| |||||| ||| |||||| || ||| ||||||  | |||||||||||| ||||||||    
T  52620652 taggctttgtttgggagtttggaggggaggggaggggagggctttggggagtgtgaaatattgagaaaaatggagatatctttca 52620736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 49861099 - 49861028
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgg 171  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||| ||||| ||||||| |  |||||||||    
T  49861099 aggctttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaatgg 49861028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 44411972 - 44412030
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||| ||||| |||||||    
T  44411972 aggctttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaata 44412030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 38456486 - 38456531
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttg 144  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||    
T  38456486 taggctttgtttgggagtttggaggggaagggaggggagagctttg 38456531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 30121340 - 30121412
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    ||||||||||||||||||| ||||||| |||||| ||| |||||| ||||| ||||||| |  ||||||||||    
T  30121340 aggctttgtttgggagtttggaggggaggggaggggagggctttggggggttggaaatatatagaaaaatgga 30121412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 5939597 - 5939682
Alignment:
Q  98 gtaggctttgtttgggagttttgaggggaagg-gaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    ||||||||||||||||||||| ||||||||||  |||| || |||||||||||||  ||||| | ||||| || |||||||||||||    
T  5939597 gtaggctttgtttgggagtttggaggggaaggaaaggaaag-gctttgaggggtgcaaaatataaggaaatatagagaaatctttca 5939682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 39499462 - 39499417
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttg 144  Q
    |||||||||||||||||||| |||||||||||||| ||| ||||||    
T  39499462 taggctttgtttgggagtttggaggggaagggaggggagggctttg 39499417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 44400963 - 44400879
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagg-gaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    |||||||||||||||||||| ||||||||||  |||| || |||||||||||||  |||||   |||||||| |||||||||||||    
T  44400963 taggctttgtttgggagtttggaggggaaggaaaggaaag-gctttgaggggtgcaaaatatgaggaaaaatagagaaatctttca 44400879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 55445171 - 55445114
Alignment:
Q  101 ggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    |||||||||||||||||| |||||||||||||| ||| ||| ||| |||| |||||||    
T  55445171 ggctttgtttgggagtttggaggggaagggaggggagggctctgatgggttggaaata 55445114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 34280751 - 34280667
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    ||||||||||||| |||||| ||||||  |||| | ||  |||||||||||||| |||||   || |||||||||||||||||||    
T  34280751 taggctttgtttgtgagtttggaggggtggggaagggaaggctttgaggggtggaaaatatgagggaaaatggagaaatctttca 34280667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 3042946 - 3043004
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    ||||||||||||||||||| ||||||||| || | ||| |||||| ||||| |||||||    
T  3042946 aggctttgtttgggagtttggaggggaagagatgggagggctttggggggttggaaata 3043004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 41099559 - 41099613
Alignment:
Q  104 tttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    ||||||||||||||| || ||||||||| ||||  |||||||||||||| |||||    
T  41099559 tttgtttgggagtttagatgggaagggatgagaaggctttgaggggtggaaaata 41099613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 54372423 - 54372477
Alignment:
Q  129 ggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    ||||| ||| ||| || ||||||||||||| |||||||||||||||| |||||||    
T  54372423 ggaggggagggctatggggggtgggaaatatagggaaaaatggagaagtctttca 54372477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 55439849 - 55439815
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggagg 133  Q
    |||||||||||||||||||| ||||||||||||||    
T  55439849 taggctttgtttgggagtttggaggggaagggagg 55439815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 21777457 - 21777536
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctt 180  Q
    ||||||||||||| ||||||  |||||| |||||| ||| |||||| |||||| |||||  |||| ||||||||||||||||    
T  21777457 taggctttgtttgagagtttgaaggggaggggagg-gagggctttg-ggggtgagaaatctaggggaaaatggagaaatctt 21777536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 47789655 - 47789622
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggagg 133  Q
    ||||||||||||||||||| ||||||||||||||    
T  47789655 aggctttgtttgggagtttggaggggaagggagg 47789622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 48908709 - 48908793
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagg-gaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    |||||||||||||||||||| ||||||||||  |||| || |||||||||||||   ||||   |||||||| |||||||||||||    
T  48908709 taggctttgtttgggagtttggaggggaaggaaaggaaag-gctttgaggggtgcagaatatgaggaaaaatagagaaatctttca 48908793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 53620160 - 53620205
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttg 144  Q
    ||||||||||||| |||||| |||||||||||||| ||| ||||||    
T  53620160 taggctttgtttgcgagtttggaggggaagggaggtgagggctttg 53620205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 1132757 - 1132789
Alignment:
Q  99 taggctttgtttgggagttttgaggggaaggga 131  Q
    |||||||||||||||||||| ||||||||||||    
T  1132757 taggctttgtttgggagtttggaggggaaggga 1132789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 37673971 - 37674054
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagg-gaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    ||||||| ||||||||||| ||||||||||  |||| || |||||||||||||  |||||   |||||||| |||||||||||||    
T  37673971 aggctttctttgggagtttggaggggaaggaaaggaaag-gctttgaggggtgcaaaatatgaggaaaaatagagaaatctttca 37674054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 41961795 - 41961867
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    ||||||||| ||||||||  |||||||||||||| ||| | |||| ||||| ||||||| |  ||||||||||    
T  41961795 aggctttgtatgggagttaggaggggaagggaggggagggttttggggggttggaaatatatagaaaaatgga 41961867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 183
Target Start/End: Original strand, 50534928 - 50535008
Alignment:
Q  103 ctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    ||||||||| |||||| ||||||| ||||  |||  |||||||| ||||| |||||   || |||||||||||||||||||    
T  50534928 ctttgtttgcgagtttggaggggaggggaacagaatgctttgagtggtggaaaatatgagggaaaatggagaaatctttca 50535008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 26574213 - 26574271
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    ||||||||||||||||||| | ||||||||||||||||||||||| ||||| |||||||    
T  26574213 aggctttgtttgggagtttggtggggaagggaggagagagctttggggggttggaaata 26574271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 29241650 - 29241709
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    |||||||||||||||||||| |||||||||||||| ||| |||||  ||||| |||||||    
T  29241650 taggctttgtttgggagtttggaggggaagggaggggagggctttagggggttggaaata 29241709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 4909698 - 4909742
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttg 144  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||||    
T  4909698 aggctttgtttgggagtttggaggggaagggaggcgagggctttg 4909742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 24734758 - 24734792
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggagg 133  Q
    |||||||||||||||||||| ||||||||||||||    
T  24734758 taggctttgtttgggagtttggaggggaagggagg 24734792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 5825595 - 5825562
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggagg 133  Q
    ||||||||||||||||||| ||||||||||||||    
T  5825595 aggctttgtttgggagtttggaggggaagggagg 5825562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 24735141 - 24735073
Alignment:
Q  104 tttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    ||||||||||||||| ||||||| |||||| ||| | |||| ||||| ||||||| |  ||||||||||    
T  24735141 tttgtttgggagtttggaggggaggggaggggagggttttggggggttggaaatatatagaaaaatgga 24735073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 32719117 - 32719200
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagg-gaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    ||||||||||||||||||| ||||||||||  |||| || |||||||||||||  |||||   | |||||| |||||||||||||    
T  32719117 aggctttgtttgggagtttagaggggaaggaaaggaaag-gctttgaggggtgcaaaatatgagtaaaaatagagaaatctttca 32719200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 35272 - 35345
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||||||||||| |||||||||||||| ||| |||||| ||||| ||||||| |  ||||||||||    
T  35272 taggctttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaatgga 35345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 34651870 - 34651943
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||||||||||| |||||||||||||| ||  |||||||||||| ||||||| |  ||||||||||    
T  34651870 taggctttgtttgggagtttggaggggaagggaggggatggctttgaggggttggaaatatatagaaaaatgga 34651943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 7666982 - 7667054
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||| ||||| ||||||| |  ||||||||||    
T  7666982 aggctttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaatgga 7667054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 3591924 - 3591840
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgagggg-tgggaaataaagggaaaaatggagaaatctttcaca 185  Q
    |||||||||||||||||||| ||||  ||||||| |||  ||||||||||| ||||||||| |  |||||||||||||||||||||||    
T  3591924 taggctttgtttgggagtttggagg--aagggag-agattgctttgaggggatgggaaatatatagaaaaatggagaaatctttcaca 3591840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 28437359 - 28437431
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||| |||||| |||||||||||||| ||| |||||| ||||| ||||||| |  ||||||||||    
T  28437359 aggctttgtttgagagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaatgga 28437431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 38505162 - 38505245
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    ||||||||||||||||||| ||||||| |||| | ||  |||||||||||||| ||||    || |||||||||||||||||||    
T  38505162 aggctttgtttgggagtttggaggggaggggaagggaaggctttgaggggtggaaaatttgagggaaaatggagaaatctttca 38505245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 41471707 - 41471621
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttcaca 185  Q
    |||||| ||||||||||||| ||||| | ||||   ||| |||||| ||||||||||||| ||||  ||||||||| ||||||||||    
T  41471707 taggctctgtttgggagtttggagggaaggggaattgagggctttggggggtgggaaatatagggggaaatggagagatctttcaca 41471621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 42112775 - 42112861
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttcaca 185  Q
    |||||||||||||||||||| ||||||| |||| |  || | |||  |||||||||| || || || ||||||||||||||||||||    
T  42112775 taggctttgtttgggagtttggaggggaggggaaggaagggttttagggggtgggaagtatagagagaaatggagaaatctttcaca 42112861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 23465818 - 23465903
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttcaca 185  Q
    ||||||||||||||||||| ||||||| |||| | ||   |||||| |||| ||||||| |||| |||||||  ||||||||||||    
T  23465818 aggctttgtttgggagtttggaggggaggggaagggaagactttgaagggttggaaatataggggaaaatggtaaaatctttcaca 23465903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 3658329 - 3658373
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttg 144  Q
    ||||||||||||||||||| |||||||||| ||||||| ||||||    
T  3658329 aggctttgtttgggagtttggaggggaaggaaggagagggctttg 3658373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 38236055 - 38236011
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttg 144  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||    
T  38236055 aggctttgtttgggagtttggaggggaagggaggggagagttttg 38236011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 22394420 - 22394331
Alignment:
Q  94 ttttgtaggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttcac 184  Q
    |||| |||| ||||||||||||||| |||| ||  ||| | ||||| |||||||||||| ||||| |  |||||||| |||||||||||||    
T  22394420 ttttttaggttttgtttgggagtttagaggagagaggatgggagagttttgaggggtggaaaatata-agaaaaatgaagaaatctttcac 22394331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 33871777 - 33871859
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatcttt 181  Q
    ||||||||||||| |||||| ||||||| |||| | ||  |||||||||||||| |||||   || ||||| |||||||||||    
T  33871777 taggctttgtttgcgagtttggaggggaggggaagggaaggctttgaggggtggaaaatatgtgggaaaattgagaaatcttt 33871859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 43189120 - 43189062
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    ||||||||||||||||||| || ||||||||||  ||| |||||| ||||| |||||||    
T  43189120 aggctttgtttgggagtttggatgggaagggagaggagggctttggggggttggaaata 43189062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 4057963 - 4058047
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    |||||||||||||| ||||| |||||||||| | || |   ||||||||||||  |||||   |||||||| |||||||||||||    
T  4057963 taggctttgtttggaagtttggaggggaaggaaagaaaagactttgaggggtgcaaaatatgaggaaaaatagagaaatctttca 4058047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 33113460 - 33113492
Alignment:
Q  99 taggctttgtttgggagttttgaggggaaggga 131  Q
    |||||||||||||||||||| ||||||||||||    
T  33113460 taggctttgtttgggagtttggaggggaaggga 33113492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 47275821 - 47275869
Alignment:
Q  102 gctttgtttgggagttttgaggggaagggaggagagagctttgaggggt 150  Q
    ||||||||||||||||| |||||||||||| | ||| |||||| |||||    
T  47275821 gctttgtttgggagtttggaggggaagggaagtgagggctttggggggt 47275869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 42650895 - 42650810
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttcaca 185  Q
    |||||||||||| |||||| |||||||||||| |  || |||||| |||||| |||||| |||||||||| || ||||||||||||    
T  42650895 aggctttgtttgtgagtttggaggggaagggaaggaagggctttggggggtgagaaatatagggaaaaattgataaatctttcaca 42650810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 20534191 - 20534119
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||||||||||| |||||||||||||| ||| |||||| ||||| ||||||| |  ||||||||||    
T  20534191 taggctttgtttgggagtttggaggggaagggaggggagggctttg-ggggttggaaatatatagaaaaatgga 20534119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 17622295 - 17622363
Alignment:
Q  104 tttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    ||||||||||||||| |||||||||||||| ||| |||||| ||||| ||||||| |  ||||||||||    
T  17622295 tttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaatgga 17622363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 13270241 - 13270174
Alignment:
Q  105 ttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||||| ||||| |||||||||||| |||||| ||||| ||||||| |  ||||||||||    
T  13270241 ttgtttgggagtttggagggaaagggaggagagggctttggggggttggaaatatatagaaaaatgga 13270174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 32060909 - 32060851
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    ||||||||||||||||||| ||| |||||||||| ||| |||||| ||||| |||||||    
T  32060909 aggctttgtttgggagtttggagtggaagggaggggagggctttggggggttggaaata 32060851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 22845049 - 22845094
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttg 144  Q
    |||||||||||||||||||| |||||||||||||| ||| ||||||    
T  22845049 taggctttgtttgggagtttggaggggaagggaggggagggctttg 22845094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 24280175 - 24280130
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttg 144  Q
    |||||||||||||||||||| |||||||||||||| || |||||||    
T  24280175 taggctttgtttgggagtttcgaggggaagggaggggaaagctttg 24280130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 41844699 - 41844642
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaa 156  Q
    |||||||||||||||||||| |||||||||||||| |||  ||||| ||||| |||||    
T  41844699 taggctttgtttgggagtttggaggggaagggaggggaggactttggggggttggaaa 41844642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 29114061 - 29114144
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagg-gaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    ||||||||||||||||||| ||||||||||  |||| || |||||||||||||  |||||   |||||||| |||||||||||||    
T  29114061 aggctttgtttgggagtttggaggggaaggaaaggaaag-gctttgaggggtgcaaaatatgaggaaaaatagagaaatctttca 29114144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 32648822 - 32648894
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||||| |||| |||||||||||||| ||| | |||| ||||| ||||||| |  ||||||||||    
T  32648822 aggctttgtttgggggtttggaggggaagggaggggagggttttggggggttggaaatatatagaaaaatgga 32648894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 38136652 - 38136735
Alignment:
Q  100 aggctttgtttgggagttttgaggggaaggg-aggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    ||||||||||||||||||| ||||||||||| |||| || |||||||||||||  |||||   || ||||| |||||||||||||    
T  38136652 aggctttgtttgggagtttggaggggaagggaaggaaag-gctttgaggggtgcaaaatatgagggaaaatagagaaatctttca 38136735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 3126829 - 3126880
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggt 150  Q
    |||| ||||||||||||||| |||||||||||| | |||||||||| |||||    
T  3126829 taggttttgtttgggagtttggaggggaagggaagggagagctttggggggt 3126880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 31530287 - 31530236
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggt 150  Q
    ||||||||||||| |||||| |||||||||||||| ||| |||||| |||||    
T  31530287 taggctttgtttgagagtttggaggggaagggaggggagggctttggggggt 31530236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 38366290 - 38366232
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    |||||||||||||||||||| ||| |||||||||| ||| |||||| ||||| |||||||    
T  38366290 taggctttgtttgggagtttggagaggaagggaggggagggctttg-ggggttggaaata 38366232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 35959430 - 35959349
Alignment:
Q  100 aggctttgtttgggagttttgaggggaaggg-aggagagagctttgaggggtgggaaataaagggaaaaatggagaaatcttt 181  Q
    ||||||||||||||||||| ||||||| ||| |||| || |||||| ||||||| ||||| || |  ||||||||||||||||    
T  35959430 aggctttgtttgggagtttggaggggaggggtaggaaag-gctttggggggtggaaaatatagagggaaatggagaaatcttt 35959349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 45899546 - 45899512
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggagg 133  Q
    |||||||||||||||||||| ||||||||||||||    
T  45899546 taggctttgtttgggagtttggaggggaagggagg 45899512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 31340657 - 31340690
Alignment:
Q  98 gtaggctttgtttgggagttttgaggggaaggga 131  Q
    ||||||||||||||||||||| ||||||||||||    
T  31340657 gtaggctttgtttgggagtttggaggggaaggga 31340690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 32948343 - 32948416
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||| |||||||| | |||| |||||||||||||||||||| |||| ||||| | ||||| |  ||||||||||    
T  32948343 taggttttgtttgagtgtttggaggggaagggaggagagagttttggggggttgaaaatatatagaaaaatgga 32948416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 33500785 - 33500701
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagg-gaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    |||||||||||||||||||| ||||||||||  |||| || |||||||||||||  |||||   |||||||| |||||| ||||||    
T  33500785 taggctttgtttgggagtttggaggggaaggaaaggaaag-gctttgaggggtgcaaaatatgtggaaaaatagagaaacctttca 33500701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 30198589 - 30198672
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagg-gaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    ||||||||||||||||||| ||| ||||||  |||| || |||||||||||||  |||||   |||||||| |||||||||||||    
T  30198589 aggctttgtttgggagtttggagaggaaggaaaggaaag-gctttgaggggtgcaaaatatgaggaaaaatagagaaatctttca 30198672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 37756537 - 37756581
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttg 144  Q
    ||||||||||||| ||||| |||||||||||||| ||| ||||||    
T  37756537 aggctttgtttggaagtttggaggggaagggaggggagggctttg 37756581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 33991806 - 33991733
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||||||||||| |||||||||||||| ||| |||||| ||||| ||||||| |  ||||||||||    
T  33991806 taggctttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaatgga 33991733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 49102793 - 49102878
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttcaca 185  Q
    ||||||||||||||||||| ||||||| |||| |  || |||||| |||| | |||||| |||||||||| |||||||||||||||    
T  49102793 aggctttgtttgggagtttggaggggaggggaaggaagggctttggggggagagaaatatagggaaaaattgagaaatctttcaca 49102878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 7915824 - 7915741
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttc 182  Q
    |||||||||||| ||||||| || |||| |||||| ||| |||||| ||||| ||||||| |||||||| | ||||||||||||    
T  7915824 taggctttgttttggagtttggacgggaggggaggggagggctttggggggtaggaaatatagggaaaatttgagaaatctttc 7915741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 39509031 - 39508946
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttcaca 185  Q
    ||||||||||||||||||| ||||||| |||| | ||||||||||  | |||||||||| |  |||||||| | ||||||||||||    
T  39509031 aggctttgtttgggagtttggaggggaggggaagggagagctttggcgagtgggaaatatatagaaaaatgaaaaaatctttcaca 39508946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 50587295 - 50587211
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttcaca 185  Q
    ||||||||||||||||||| || |||| |||| | | | ||||||| |||||||||||| |||| |||||||||||||||| ||||    
T  50587295 aggctttgtttgggagtttggaagggaggggaaggggg-gctttgaagggtgggaaatagaggggaaaatggagaaatcttacaca 50587211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 45565392 - 45565320
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||| |||||| |||||||||||||| ||| | |||||||||| ||||||| |  ||||||||||    
T  45565392 aggctttgtttgcgagtttggaggggaagggaggggagggttttgaggggttggaaatatatagaaaaatgga 45565320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 2925755 - 2925802
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgagg 147  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||    
T  2925755 aggctttgtttgggagtttgaaggggaagggaggggagagctttgagg 2925802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 1688035 - 1688093
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    |||| |||||||||||||| |||||||||||||| ||| |||||| ||||| |||||||    
T  1688035 aggcgttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaata 1688093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 32300318 - 32300260
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||| | ||| |||||||    
T  32300318 aggctttgtttgggagtttggaggggaagggaggggagggctttgggaggttggaaata 32300260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 38795228 - 38795170
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    ||||||||||||||||||| |||||||||||||| |||| |||||  |||| |||||||    
T  38795228 aggctttgtttgggagtttggaggggaagggaggggagaactttggtgggttggaaata 38795170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 896314 - 896386
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||||||||||| |||| ||||||||| ||| |||||| ||||| ||||||| |  ||||||||||    
T  896314 taggctttgtttgggagtttggaggagaagggaggggagggctttg-ggggttggaaatatatagaaaaatgga 896386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 1523859 - 1523786
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||||||||||| |||||||| ||| | ||||| |||| ||||| ||||||| |  ||||||||||    
T  1523859 taggctttgtttgggagtttggaggggaatggatgggagagttttggggggttggaaatatattgaaaaatgga 1523786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 15464075 - 15464002
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    ||||||||||||||||||||  ||||||||||||| ||| | |||| ||||| ||||||| |  ||||||||||    
T  15464075 taggctttgtttgggagtttgaaggggaagggaggggagggttttggggggttggaaatatatagaaaaatgga 15464002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 37649433 - 37649517
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagg-gaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    |||||||||||||||||||| ||||||||||  |||| || |||||||||||||  |||||   |||||||| |||||||||||||    
T  37649433 taggctttgtttgggagtttggaggggaaggaaaggaaag-gctttgaggggtgcaaaatatgaggaaaaatagagaaatctttca 37649517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 50476791 - 50476706
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttcaca 185  Q
    ||||||||||||||||||| |||||||||||  | ||| | ||||  ||||| |||||| |  || ||||||||||||||||||||    
T  50476791 aggctttgtttgggagtttggaggggaagggtagggagggttttggagggtgagaaatatatagagaaatggagaaatctttcaca 50476706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 32299366 - 32299323
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagcttt 143  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||    
T  32299366 aggctttgtttgggagtttggaggggaagggaggggagggcttt 32299323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 42161871 - 42161929
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    |||||||||||||||||||| ||||||||| |||| ||| |||||| ||||| |||||||    
T  42161871 taggctttgtttgggagtttggaggggaagagaggggagggctttg-ggggttggaaata 42161929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 43571786 - 43571845
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    |||||||||||||||||||| ||| |||||||||| ||  |||||| ||||| |||||||    
T  43571786 taggctttgtttgggagtttggagaggaagggaggggaaggctttggggggttggaaata 43571845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 27500247 - 27500189
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    |||| |||||||||||||| ||| |||||||||| ||| |||||| ||||| |||||||    
T  27500247 aggcattgtttgggagtttggagaggaagggaggggagggctttggggggttggaaata 27500189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 50247860 - 50247782
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaat 177  Q
    |||||||| ||||||||||| |||||||||||||| ||| | |||| | ||| ||||||| |  |||||||||| ||||    
T  50247860 taggctttctttgggagtttggaggggaagggaggggagggttttgggtggttggaaatatatagaaaaatggacaaat 50247782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 51246773 - 51246735
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagag 137  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  51246773 taggctttgtttgggagtttggaggggaggggaggagag 51246735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 9595824 - 9595791
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggagg 133  Q
    ||||||||||||||||||| ||||||||||||||    
T  9595824 aggctttgtttgggagtttggaggggaagggagg 9595791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 34154538 - 34154501
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggaga 136  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  34154538 taggctttgtttgcgagtttggaggggaagggaggaga 34154501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 133
Target Start/End: Complemental strand, 39179315 - 39179282
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggagg 133  Q
    ||||||||||||||||||| ||||||||||||||    
T  39179315 aggctttgtttgggagtttggaggggaagggagg 39179282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 43036141 - 43036222
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatcttt 181  Q
    ||||||||||||||||||| ||||||| |||| |  || |||||| |||||| |||||| | || ||||| || ||||||||    
T  43036141 aggctttgtttgggagtttggaggggaggggaaggaagggctttgtggggtgagaaatagaagggaaaattgaaaaatcttt 43036222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 7401388 - 7401456
Alignment:
Q  104 tttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    ||||||||||||||| ||||||||| |||| ||| |||||| |||||  |||||| |  ||||||||||    
T  7401388 tttgtttgggagtttggaggggaagagaggggagggctttggggggttagaaatatatagaaaaatgga 7401456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 24369081 - 24369164
Alignment:
Q  100 aggctttgtttgggagttttgagggga-agggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    |||||||||||| |||||| ||||||| ||| |||  ||| ||||||||||||  |||||   ||||||||||||||||||||||    
T  24369081 aggctttgtttgtgagtttagaggggagaggaagggaaga-ctttgaggggtgcaaaatacgaggaaaaatggagaaatctttca 24369164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 41432579 - 41432611
Alignment:
Q  99 taggctttgtttgggagttttgaggggaaggga 131  Q
    |||||||||||||||||||| ||||||||||||    
T  41432579 taggctttgtttgggagtttggaggggaaggga 41432611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 33230864 - 33230922
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    ||||||||||||||||||| |||||||||||||||||| |||||| || || |||||||    
T  33230864 aggctttgtttgggagtttggaggggaagggaggagagggctttggggagttggaaata 33230922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 12506013 - 12506097
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    ||||||||||||| || ||| ||||||| |||| ||||  | |||||||||||| ||||| | | ||||||||||||||||||||    
T  12506013 taggctttgtttgcgaatttggaggggaggggaagagaaggttttgaggggtggaaaatataagaaaaaatggagaaatctttca 12506097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 36906452 - 36906380
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||| | ||| ||||||| |  ||||||||||    
T  36906452 aggctttgtttgggagtttggaggggaagggaggggagggctttgggaggttggaaatatatagaaaaatgga 36906380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 42589704 - 42589761
Alignment:
Q  128 gggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttcaca 185  Q
    |||||| ||| |||||| ||| ||||||||| ||| ||||||||||||||||||||||    
T  42589704 gggaggggagggctttgggggatgggaaatataggaaaaaatggagaaatctttcaca 42589761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 34148398 - 34148469
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    ||||||||||||||||||| |||||||||||||| ||| | |||| ||||| ||||||| |  ||||||||||    
T  34148398 aggctttgtttgggagtttggaggggaagggaggggagggttttg-ggggttggaaatataaagaaaaatgga 34148469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 79439 - 79521
Alignment:
Q  101 ggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    ||||||||||| |||||| ||||||| |||| | ||  ||||||||| |||| |||||   || |||||||||||||||||||    
T  79439 ggctttgtttgcgagtttggaggggaggggaagggaaggctttgaggagtggaaaatatgagggaaaatggagaaatctttca 79521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 1111059 - 1111112
Alignment:
Q  104 tttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    ||||||||||||||| |||||||||||| | ||| |||||| |||||||||||||    
T  1111059 tttgtttgggagtttggaggggaagggaagggagggctttg-ggggtgggaaata 1111112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 1941867 - 1941901
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggagg 133  Q
    |||||||||||||||||||| ||||||||||||||    
T  1941867 taggctttgtttgggagtttggaggggaagggagg 1941901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 3404399 - 3404449
Alignment:
Q  108 tttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    ||||||||||| |||||||||||||| |||  ||||||||||| |||||||    
T  3404399 tttgggagtttggaggggaagggaggggaggactttgaggggttggaaata 3404449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 21537117 - 21537174
Alignment:
Q  102 gctttgtttgggagttttgaggggaagggaggagagagctttgag-gggtgggaaata 158  Q
    ||||||||| | ||||| ||| |||||||||| |||||||||||| ||||||||||||    
T  21537117 gctttgttttgtagtttggagaggaagggaggggagagctttgagagggtgggaaata 21537174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 23932367 - 23932447
Alignment:
Q  101 ggctttgtttgggagttttgaggggaagg-gaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatcttt 181  Q
    |||||||||||||||||||||||||||||  |||| || |||||||||||||  |||||    ||||||| |||||||||||    
T  23932367 ggctttgtttgggagttttgaggggaaggaaaggaaag-gctttgaggggtgcaaaatatgaagaaaaatagagaaatcttt 23932447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 31550079 - 31550151
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    ||||||||||||||| ||| ||||||||||||||||||   |||||||||| ||||||| |  ||||||||||    
T  31550079 aggctttgtttgggaatttggaggggaagggaggagaggattttgaggggttggaaatatatagaaaaatgga 31550151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 185
Target Start/End: Complemental strand, 7310303 - 7310220
Alignment:
Q  102 gctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttcaca 185  Q
    ||||||||||||||||| |||| ||| | ||  |||| ||||||||| ||  ||||| |||||||||||||||||||| |||||    
T  7310303 gctttgtttgggagtttagaggagaaagaagtggagaactttgagggttgaaaaatatagggaaaaatggagaaatctctcaca 7310220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 15803435 - 15803350
Alignment:
Q  100 aggctttgtttgggagttttgaggggaaggg-aggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttcaca 185  Q
    ||||||||||||||||||| ||||||| ||| |||| || |||||| |||| | |||||| |||| ||||| |||||||||||||||    
T  15803435 aggctttgtttgggagtttggaggggaggggaaggaaag-gctttggggggagagaaatataggggaaaattgagaaatctttcaca 15803350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 8990780 - 8990853
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||| ||||||||||||||| |||||||||| ||| ||| |||||| ||||| ||||||| |  ||||||||||    
T  8990780 taggttttgtttgggagtttggaggggaaggaaggggagggctttggggggttggaaatatatagaaaaatgga 8990853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 19383138 - 19383069
Alignment:
Q  103 ctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||||||| ||| |||||||||||||| |||||| ||||| | ||||| |  ||||||||||    
T  19383138 ctttgtttgggagtttggagaggaagggaggagagggctttggggggttgaaaatatatagaaaaatgga 19383069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 40212264 - 40212183
Alignment:
Q  102 gctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    ||||||||||||||||| |||||||||| | || |  |||||||||||||  |||||   |||||||| |||||||||||||    
T  40212264 gctttgtttgggagtttggaggggaaggaaagaaaaggctttgaggggtgcaaaatatgaggaaaaatagagaaatctttca 40212183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 43572361 - 43572445
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagg-gaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    |||||||||||||||||||| ||||||||||  |||| || |||||||||||||  |||||   |||||||| |||||||||||||    
T  43572361 taggctttgtttgggagtttggaggggaaggaaaggaaag-gctttgaggggtgcaaaatatgaggaaaaatagagaaatctttca 43572445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 18826048 - 18826082
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggagg 133  Q
    |||||||||||||||||||| ||||||||||||||    
T  18826048 taggctttgtttgggagtttggaggggaagggagg 18826082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 26599072 - 26599154
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatcttt 181  Q
    |||||||||||||||||||| || |||| || |   |||||||||| || || || |||| |||| |||||||||||||||||    
T  26599072 taggctttgtttgggagtttggatgggagggaaaaggagagctttggggtgtaggcaatataggggaaaatggagaaatcttt 26599154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 42644909 - 42644871
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagag 137  Q
    |||||| ||||||||||||| ||||||||||||||||||    
T  42644909 taggctctgtttgggagtttggaggggaagggaggagag 42644871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 10165673 - 10165604
Alignment:
Q  103 ctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||| ||||| |||||||||||||  ||| |||||| ||||| ||||||| |  ||||||||||    
T  10165673 ctttgtttggaagtttggaggggaagggagaggagggctttggggggttggaaatatatagaaaaatgga 10165604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 13018295 - 13018379
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagg-gaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    |||||||||||||||||||| ||||||||||  |||| || |||||||||||||  |||||   | |||||| |||||||||||||    
T  13018295 taggctttgtttgggagtttggaggggaaggaaaggaaag-gctttgaggggtgcaaaatatgtgaaaaaatagagaaatctttca 13018379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 14008147 - 14008180
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggagg 133  Q
    ||||||||||||||||||| ||||||||||||||    
T  14008147 aggctttgtttgggagtttggaggggaagggagg 14008180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 16813507 - 16813544
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggaga 136  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  16813507 taggctttgtttgcgagtttggaggggaagggaggaga 16813544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 16852786 - 16852823
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggaga 136  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  16852786 taggctttgtttgcgagtttggaggggaagggaggaga 16852823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 25955651 - 25955724
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||||||||||| |||||||| | ||| ||| ||||||  |||| ||||||| |  ||||||||||    
T  25955651 taggctttgtttgggagtttggaggggaaagaaggggagggctttggtgggttggaaatatatagaaaaatgga 25955724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 36031004 - 36030971
Alignment:
Q  152 ggaaataaagggaaaaatggagaaatctttcaca 185  Q
    ||||||| ||||||||||||||||||||||||||    
T  36031004 ggaaatacagggaaaaatggagaaatctttcaca 36030971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 36567095 - 36567168
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||| || |||||| |||||||||||||| ||| |||||| ||||| | ||||| |  ||||||||||    
T  36567095 taggctttgtctgtgagtttggaggggaagggaggggagggctttggggggttgaaaatatatagaaaaatgga 36567168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 40357721 - 40357676
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttg 144  Q
    |||||||||||||| ||||| |||||||||||||| ||||| ||||    
T  40357721 taggctttgtttggaagtttggaggggaagggaggggagagttttg 40357676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 44137341 - 44137296
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttg 144  Q
    |||||||||||||||||||| |||||||||||| | ||| ||||||    
T  44137341 taggctttgtttgggagtttggaggggaagggaagggagggctttg 44137296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 31584584 - 31584668
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatggagaaatctttca 183  Q
    |||| |||||||| |||||| ||||||| |||| || |   |||||||||| | |||||| || ||||||| |||||||||||||    
T  31584584 taggttttgtttgagagtttggaggggaggggaagaaaagactttgaggggagagaaatatagagaaaaattgagaaatctttca 31584668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 31899176 - 31899232
Alignment:
Q  102 gctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    ||||||||||||||||| |||||||||||||  || | ||||| ||||| |||||||    
T  31899176 gctttgtttgggagtttggaggggaagggagaggaaaactttggggggttggaaata 31899232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 172
Target Start/End: Complemental strand, 44020590 - 44020526
Alignment:
Q  108 tttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    ||||||||||| |||||||||||||||||| | |||| ||||| | ||||| |  ||||||||||    
T  44020590 tttgggagtttggaggggaagggaggagagggttttggggggttgaaaatatatagaaaaatgga 44020526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 1843 - 1784
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    ||||||||||||| |||||| |||||||||||||| ||| |||||| ||||| |||||||    
T  1843 taggctttgtttgagagtttggaggggaagggaggggagggctttggggggttggaaata 1784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 158
Target Start/End: Complemental strand, 8654 - 8596
Alignment:
Q  100 aggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaata 158  Q
    |||||||||||||| |||| ||||||||| |||| ||| |||||||||||| |||||||    
T  8654 aggctttgtttgggggtttggaggggaagagaggggagggctttgaggggttggaaata 8596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 400 - 332
Alignment:
Q  103 ctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    ||||||||| |||||| |||||||||||||| ||| |||||| ||||| ||||||| |  ||||||||||    
T  400 ctttgtttgagagtttggaggggaagggaggggagggctttg-ggggttggaaatatatagaaaaatgga 332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 172
Target Start/End: Original strand, 2193 - 2261
Alignment:
Q  103 ctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    ||||||||| |||||| |||||||||||||| ||| |||||| ||||| ||||||| |  ||||||||||    
T  2193 ctttgtttgagagtttggaggggaagggaggggagggctttg-ggggttggaaatatatagaaaaatgga 2261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0952 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 3486 - 3559
Alignment:
Q  99 taggctttgtttgggagttttgaggggaagggaggagagagctttgaggggtgggaaataaagggaaaaatgga 172  Q
    |||||||||||||||||||| ||||||||| || | ||| |||||| ||||| || |||| |  ||||||||||    
T  3486 taggctttgtttgggagtttggaggggaagagatgggagggctttggggggttggcaatatatagaaaaatgga 3559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University