View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6216_high_28 (Length: 237)

Name: NF6216_high_28
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6216_high_28
NF6216_high_28
[»] chr1 (2 HSPs)
chr1 (91-209)||(26496226-26496346)
chr1 (16-80)||(26496172-26496236)
[»] chr4 (3 HSPs)
chr4 (16-80)||(47521381-47521445)
chr4 (153-217)||(47521508-47521572)
chr4 (91-136)||(47521435-47521480)
[»] chr6 (6 HSPs)
chr6 (16-78)||(4092119-4092181)
chr6 (153-217)||(4092246-4092310)
chr6 (16-80)||(4435897-4435961)
chr6 (159-217)||(4436030-4436088)
chr6 (91-133)||(4435951-4435993)
chr6 (91-131)||(4092173-4092213)
[»] chr5 (4 HSPs)
chr5 (16-80)||(37719197-37719261)
chr5 (159-217)||(37719070-37719128)
chr5 (91-133)||(37719165-37719207)
chr5 (153-217)||(30440488-30440552)
[»] chr3 (3 HSPs)
chr3 (159-217)||(46594750-46594808)
chr3 (16-80)||(46594877-46594941)
chr3 (91-133)||(46594845-46594887)


Alignment Details
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 26496226 - 26496346
Alignment:
Q  91 tgtttgcaagagctgtctgaatcaggaagcaatttattcaaagttgttagg--atgaaaggatcacatatggtcttattttaggttttcattataaaatt 188  Q
    |||||||| |||||||||||||||||||||||||||||||||| || ||||  |||||||||| |||| |||||||||| |||||||||| |||||||||    
T  26496226 tgtttgcaggagctgtctgaatcaggaagcaatttattcaaagctgataggggatgaaaggattacatttggtcttattctaggttttcactataaaatt 26496325  T
Q  189 gatgataatcttgattttggt 209  Q
    |  ||||||||||||| ||||    
T  26496326 ggggataatcttgattctggt 26496346  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 26496172 - 26496236
Alignment:
Q  16 atgtgactcttttgcttttgtttctcttggtttttggatagtaaaattaaaggatgtttgcagga 80  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  26496172 atgtgactctttttcttttgtttgttttggtttttggatagtaaaattaaaggatgtttgcagga 26496236  T

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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 47521381 - 47521445
Alignment:
Q  16 atgtgactcttttgcttttgtttctcttggtttttggatagtaaaattaaaggatgtttgcagga 80  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  47521381 atgtgactcttttgcttttgtttcttttggttattggatagtaaaattaaaggatgtttgcagga 47521445  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 47521508 - 47521572
Alignment:
Q  153 acatatggtcttattttaggttttcattataaaattgatgataatcttgattttggtgtagattt 217  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  47521508 acatatggtcttattctaggttttcattataaaattggtgataatcttgattctggtgtagattt 47521572  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 47521435 - 47521480
Alignment:
Q  91 tgtttgcaagagctgtctgaatcaggaagcaatttattcaaagttg 136  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  47521435 tgtttgcaggagctgtctgaatcaggaagcaatttattcaaagttg 47521480  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 4092119 - 4092181
Alignment:
Q  16 atgtgactcttttgcttttgtttctcttggtttttggatagtaaaattaaaggatgtttgcag 78  Q
    ||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  4092119 atgtgtctcttttgcttttgtttcttttggttattggatagtaaaattaaaggatgtttgcag 4092181  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 4092246 - 4092310
Alignment:
Q  153 acatatggtcttattttaggttttcattataaaattgatgataatcttgattttggtgtagattt 217  Q
    |||| |||||||||| |||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  4092246 acatctggtcttattctaggttttcattatgaaattggtgataatcttgattctggtgtagattt 4092310  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 4435897 - 4435961
Alignment:
Q  16 atgtgactcttttgcttttgtttctcttggtttttggatagtaaaattaaaggatgtttgcagga 80  Q
    |||||| | ||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||    
T  4435897 atgtgatttttttgctttcgtttcttttggttattggatagtaaaattaaaggatgtttgcagga 4435961  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 4436030 - 4436088
Alignment:
Q  159 ggtcttattttaggttttcattataaaattgatgataatcttgattttggtgtagattt 217  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||| || |||||||||    
T  4436030 ggtcttattctaggttttcattataaaattggtgataatcttgattctgatgtagattt 4436088  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 4435951 - 4435993
Alignment:
Q  91 tgtttgcaagagctgtctgaatcaggaagcaatttattcaaag 133  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  4435951 tgtttgcaggagctgtctgaatcaggaagcaatttattcaaag 4435993  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 4092173 - 4092213
Alignment:
Q  91 tgtttgcaagagctgtctgaatcaggaagcaatttattcaa 131  Q
    ||||||||  |||||||| ||||||||||||||||||||||    
T  4092173 tgtttgcagtagctgtctaaatcaggaagcaatttattcaa 4092213  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 37719261 - 37719197
Alignment:
Q  16 atgtgactcttttgcttttgtttctcttggtttttggatagtaaaattaaaggatgtttgcagga 80  Q
    |||||| | |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  37719261 atgtgatttttttgcttttgtttcttttggttattggatagtaaaattaaaggatgtttgcagga 37719197  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 37719128 - 37719070
Alignment:
Q  159 ggtcttattttaggttttcattataaaattgatgataatcttgattttggtgtagattt 217  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  37719128 ggtcttattctaggttttcattataaaattggtgataatcttgattctggtgtagattt 37719070  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 37719207 - 37719165
Alignment:
Q  91 tgtttgcaagagctgtctgaatcaggaagcaatttattcaaag 133  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  37719207 tgtttgcaggagctgtctgaatcaggaagcaatttattcaaag 37719165  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 30440552 - 30440488
Alignment:
Q  153 acatatggtcttattttaggttttcattataaaattgatgataatcttgattttggtgtagattt 217  Q
    |||| ||||||| || |||||||||| ||||| |||| |||||||||||||| ||||||||||||    
T  30440552 acatctggtctttttctaggttttcactataacattggtgataatcttgattctggtgtagattt 30440488  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 46594808 - 46594750
Alignment:
Q  159 ggtcttattttaggttttcattataaaattgatgataatcttgattttggtgtagattt 217  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  46594808 ggtcttattctaggttttcattataaaattggtgataatcttgattctggtgtagattt 46594750  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 46594941 - 46594877
Alignment:
Q  16 atgtgactcttttgcttttgtttctcttggtttttggatagtaaaattaaaggatgtttgcagga 80  Q
    |||||| | ||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||    
T  46594941 atgtgatttttttgctttcgtttcttttggttattggatagtaaaattaaaggatgtttgcagga 46594877  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 46594887 - 46594845
Alignment:
Q  91 tgtttgcaagagctgtctgaatcaggaagcaatttattcaaag 133  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  46594887 tgtttgcaggagctgtctgaatcaggaagcaatttattcaaag 46594845  T

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