View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6216_high_29 (Length: 237)

Name: NF6216_high_29

Description: NF6216

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF6216_high_29

[»] chr5 (5 HSPs)

Alignment Details

Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 5)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 225; E-Value: 1e-124

Query Start/End: Original strand, 1 - 237

Target Start/End: Complemental strand, 39901895 - 39901659

Alignment:

Q	1	tcagctaattcatggaaggatacttaatttctcttttaatttaaactgataaacattagatgctgctcaacctgaaactgccaacactgtggattctttg	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39901895	tcagctaattcatggcaggatacttaatttctcttttaatttaaactgataaacattagatgctgctcaacctgaaactgccaacactgtggattctttg	39901796	T

Q	101	ccaaaacgattcaaatggacaattgacagattttctcagaaaaatgcgagagagatctattcagatgtatttgaagttggtggctataaatggtattttg	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39901795	ccaaaacgattcaaatggacaattgacagattttctcagaaaaatgcgagagagatctattcagatgtatttgaagttggtggctataaatggtattttg	39901696	T

Q	201	cttacacattccccgaatcaactgatgatgtccatct	237	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|
T	39901695	cttacacattccccgaatcaactcatgatgttcatct	39901659	T

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Target: chr5; HSP #2

Raw Score: 50; E-Value: 9e-20

Query Start/End: Original strand, 156 - 221

Target Start/End: Complemental strand, 39913701 - 39913636

Alignment:

Q	156	tctattcagatgtatttgaagttggtggctataaatggtattttgcttacacattccccgaatcaa	221	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	39913701	tctattcagatgtatttgaagctgggggctataaatggtattgtgcttacacattccctgaatcaa	39913636	T

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Target: chr5; HSP #3

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 23 - 93

Target Start/End: Complemental strand, 37477029 - 37476959

Alignment:

Q	23	cttaatttctcttttaatttaaactgataaacattagatgctgctcaacctgaaactgccaacactgtgga	93	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \| \| \|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37477029	cttaattgctcttttcatttatattcatgaacattagtggttgctcaacctgaaactgccaacactgtgga	37476959	T

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Target: chr5; HSP #4

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 156 - 197

Target Start/End: Complemental strand, 39868266 - 39868225

Alignment:

Q	156	tctattcagatgtatttgaagttggtggctataaatggtatt	197	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|
T	39868266	tctattcagatgtatttgaagttgggggttacaaatggtatt	39868225	T

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Target: chr5; HSP #5

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 160 - 196

Target Start/End: Original strand, 39732729 - 39732765

Alignment:

Q	160	ttcagatgtatttgaagttggtggctataaatggtat	196	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39732729	ttcagatgtatttgatgttgggggctataaatggtat	39732765	T

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