View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6216_high_30 (Length: 236)
Name: NF6216_high_30
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6216_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 49272667 - 49272877
Alignment:
| Q |
17 |
agtttttaacatttattgctatctttatattgctatcagcttgtttagttgacatctttgaagcttatggcttaattttattagagcagaatatcaaatc |
116 |
Q |
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| T |
49272667 |
agtttttaacatttattgctatctttatattgctatcagcttgtttagttgacatctttgaagcttatggcttaattttattagagcagaatatcaaatc |
49272766 |
T |
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| Q |
117 |
tcagatactataaggactaaggagaaaactgatgatattctttttctcctgggttcaatttttgttaagctctgcagtgttagtgtaacttttatcatat |
216 |
Q |
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| T |
49272767 |
tcagatactataaggactaaggagaaaactgatgatattctttttctcctgggttcaatttttgttaagctctgcagtgttagtgtaacttttatcatat |
49272866 |
T |
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| Q |
217 |
tatgatgatgt |
227 |
Q |
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| T |
49272867 |
tatgatgatgt |
49272877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 49270603 - 49270688
Alignment:
| Q |
53 |
cagcttgtttagttgacatctttgaagcttatggcttaattttattagagcagaatatcaaatctcagatactataaggactaagg |
138 |
Q |
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| T |
49270603 |
cagcttgtttagttaacatctctaaagcttatagcttgatgtgattagagagaaatatcaaatctcagatactataaagactaagg |
49270688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 49270727 - 49270808
Alignment:
| Q |
147 |
gatgatattctttttctcctgggttcaatttttgttaag-ctctgcagtgttagtgtaacttttatcatattatgatgatgt |
227 |
Q |
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| T |
49270727 |
gatgatattttttttcttctcagttcaatttttggtaaggctctgcagtgttagtgtatcctttatcatatcatgatgatgt |
49270808 |
T |
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