View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6216_low_10 (Length: 371)
Name: NF6216_low_10
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6216_low_10 |
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| [»] scaffold0102 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 4696762 - 4696990
Alignment:
| Q |
1 |
gaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4696762 |
gaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaactt |
4696861 |
T |
|
| Q |
101 |
ctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgct |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4696862 |
ctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaataaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgct |
4696961 |
T |
|
| Q |
201 |
atcttatttctcaacatcttcttctaata |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
4696962 |
atcttatttctcaacatcttcttctaata |
4696990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 4674506 - 4674659
Alignment:
| Q |
2 |
aaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaacttc |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4674506 |
aaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatga------atgtagaagttggttatgacagctatgtctaactaacttc |
4674599 |
T |
|
| Q |
102 |
tatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccac |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4674600 |
tatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaataaggtaatttccac |
4674659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 23415095 - 23415324
Alignment:
| Q |
1 |
gaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
23415095 |
gaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatatagaagttggttatgacagctatgtctacctaactt |
23415194 |
T |
|
| Q |
101 |
ctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23415195 |
ctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgct |
23415294 |
T |
|
| Q |
201 |
atcttatttctcaacatcttcttctaatac |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
23415295 |
atcttatttctcaacatcttcttctaatac |
23415324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 23419884 - 23420113
Alignment:
| Q |
1 |
gaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
23419884 |
gaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatatagaagttggttatgacagctatgtctacctaactt |
23419983 |
T |
|
| Q |
101 |
ctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23419984 |
ctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgct |
23420083 |
T |
|
| Q |
201 |
atcttatttctcaacatcttcttctaatac |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
23420084 |
atcttatttctcaacatcttcttctaatac |
23420113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 226 - 340
Target Start/End: Original strand, 37656024 - 37656138
Alignment:
| Q |
226 |
aatactttgttttgaaattaaactgtaaattaaatataaagataaggtggttagaatcaaatggtaatttacgagtatagaagttctaatttcataacta |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37656024 |
aatactttgttttgaaattaaactgtaaattaaatgtaaagataaggtggttagaatcaaatggtaatttacgagtatagaagttctaatttcataacta |
37656123 |
T |
|
| Q |
326 |
ggtgaagatcatgga |
340 |
Q |
| |
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||||||||||||||| |
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| T |
37656124 |
ggtgaagatcatgga |
37656138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 6931 - 6702
Alignment:
| Q |
1 |
gaaaaatgaagtgaaaaagattattgattagttcaactgaattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6931 |
gaaaaatgaagtgaaaaagattattgattgattcaactgaattctgttacaatgagggtatatatagaagttggttatgacagctatgtctaactaactt |
6832 |
T |
|
| Q |
101 |
ctatctatctaaatgtaaaagaaatacaaatgaaattacatgtaaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgct |
200 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
6831 |
ctgtctatctaaatgtaaatgaaatacaaatgaaattacatgtaaatgaggtaacttccacattcagcaaactaagaattctagctgctatttacgtgct |
6732 |
T |
|
| Q |
201 |
atcttatttctcaacatcttcttctaatac |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
6731 |
atcttatttctcaacatcttcttctaatac |
6702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 2413 - 2349
Alignment:
| Q |
166 |
agcaaactaagaattctagctgctatttacgtgctatcttatttctcaacatcttcttctaatac |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2413 |
agcaaactaagaattctagctgctatttacgtgctatcttatttctcaacatcttcttctaatac |
2349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 40 - 205
Target Start/End: Complemental strand, 14325978 - 14325812
Alignment:
| Q |
40 |
aattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaacttctatctatctaaatgtaaaagaaatacaaatgaaattac |
139 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||| ||| ||| || ||||||||||||||||| | ||||| || |||| ||||||||||||| |
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|
| T |
14325978 |
aattcttttacaatgagggtatatatagaagttggttataacaactaagtataactaacttctatctaaccaaatgaaactaaaatgcaaatgaaattac |
14325879 |
T |
|
| Q |
140 |
atgt-aaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgctatctt |
205 |
Q |
| |
|
|||| ||||||| ||| || ||| ||||||||||||||| |||| ||||||||||||| |||||| |
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|
| T |
14325878 |
atgtaaaatgagataacttgcacgctaagcaaactaagaaccctagatgctatttacgtgttatctt |
14325812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 40 - 205
Target Start/End: Complemental strand, 14418988 - 14418822
Alignment:
| Q |
40 |
aattctgttacaatgagggtatatgtagaagttggttatgacagctatgtctaactaacttctatctatctaaatgtaaaagaaatacaaatgaaattac |
139 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||| ||| ||| || ||||||||||||||||| | ||||| || |||| ||||||||||||| |
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|
| T |
14418988 |
aattcttttacaatgagggtatatatagaagttggttataacaactaagtataactaacttctatctaaccaaatgaaactaaaatgcaaatgaaattac |
14418889 |
T |
|
| Q |
140 |
atgt-aaatgaggtaatttccacattaagcaaactaagaattctagctgctatttacgtgctatctt |
205 |
Q |
| |
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|||| ||||||| ||| || ||| ||||||||||||||| |||| ||||||||||||| |||||| |
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| T |
14418888 |
atgtaaaatgagataacttgcacgctaagcaaactaagaaccctagatgctatttacgtgttatctt |
14418822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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