View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6216_low_12 (Length: 337)
Name: NF6216_low_12
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6216_low_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 337
Target Start/End: Complemental strand, 19062592 - 19062268
Alignment:
| Q |
10 |
ataatactacaaagaaaactgatttgttataacttataattaagctggcacactgatttgttagaattatgtaggccagaggagaagtttctttttgata |
109 |
Q |
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| T |
19062592 |
ataatactacaaagaacactgatttgttataact-ataattaagctggcacactgatttgttagaattatgtgggccagaggagaaggttctttttgata |
19062494 |
T |
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| Q |
110 |
atacataagtaattgatgttttcaaattgtttgctctaattaaaatttgtaaaagcaaactttataatactattaaatttgtactttagtaaacttttcc |
209 |
Q |
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| T |
19062493 |
atacat--gtaattgatgttttcaaattgtttgctctaattaaaatttgtaaaagcaaactttataatactattaaatttatactttattaaacttttcc |
19062396 |
T |
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| Q |
210 |
agcgattctagtaacctgatttattttaaagatgaatccactatcattttactatcaattgtcttttacatagattctttaaagtcacattttactaaaa |
309 |
Q |
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| T |
19062395 |
agcgattctagtaacctgatttattttaaagatgaatccactatcattttactatcaattgtcttttacattgattctttaaagtcacattttactaaaa |
19062296 |
T |
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| Q |
310 |
tgtttgaagttcgaggatggatttgaga |
337 |
Q |
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| T |
19062295 |
tgtttgaagttcgaggatggatttgaga |
19062268 |
T |
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