View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6216_low_16 (Length: 287)

Name: NF6216_low_16
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6216_low_16
NF6216_low_16
[»] chr1 (4 HSPs)
chr1 (133-270)||(26496050-26496184)
chr1 (30-80)||(16960945-16960995)
chr1 (30-77)||(25868914-25868961)
chr1 (185-229)||(16960828-16960872)
[»] chr8 (1 HSPs)
chr8 (17-107)||(38016354-38016448)
[»] chr4 (2 HSPs)
chr4 (30-95)||(47521199-47521264)
chr4 (185-241)||(47521322-47521377)
[»] chr3 (2 HSPs)
chr3 (30-83)||(46595069-46595122)
chr3 (171-241)||(46594945-46595014)
[»] chr6 (4 HSPs)
chr6 (185-241)||(4092060-4092115)
chr6 (30-82)||(4435716-4435768)
chr6 (30-77)||(4091937-4091984)
chr6 (171-241)||(4435824-4435893)
[»] chr5 (1 HSPs)
chr5 (171-241)||(37719265-37719334)
[»] chr2 (1 HSPs)
chr2 (95-142)||(17950235-17950282)


Alignment Details
Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 133 - 270
Target Start/End: Original strand, 26496050 - 26496184
Alignment:
Q  133 aagctatgtattttgacataaacacttcaagaatggtggatgcatttgttgttgtagaatcgcttttgttttaacaggttgtatataactgatttttaga 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| ||||||||    
T  26496050 aagctatgtattttgacataaacacttcaagaatggtggatgcatttgttgctgtagaatctcttttgttttaacaggttgtatatcactg-tttttaga 26496148  T
Q  233 atttctttagttgcaacctaccaatatgtgactctttt 270  Q
    |||| |||||||| |||||||||  |||||||||||||    
T  26496149 atttgtttagttgaaacctacca--atgtgactctttt 26496184  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 16960995 - 16960945
Alignment:
Q  30 tattgagcaaacaatggtgattttgagaataaaaagtggtaaaaagaatgg 80  Q
    |||||| |||||||||||  |||||||||||||||||||||||||||||||    
T  16960995 tattgaacaaacaatggtatttttgagaataaaaagtggtaaaaagaatgg 16960945  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 25868914 - 25868961
Alignment:
Q  30 tattgagcaaacaatggtgattttgagaataaaaagtggtaaaaagaa 77  Q
    |||||| |||||||||||  ||||||||||||||||||||||||||||    
T  25868914 tattgaacaaacaatggtatttttgagaataaaaagtggtaaaaagaa 25868961  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 16960872 - 16960828
Alignment:
Q  185 tgtagaatcgcttttgttttaacaggttgtatataactgattttt 229  Q
    ||||||||| |||||||||||||||||| ||||| |||| |||||    
T  16960872 tgtagaatctcttttgttttaacaggttttatatcactgtttttt 16960828  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 38016448 - 38016354
Alignment:
Q  17 attttgtggtttgtattgagcaaacaatggtgattttgagaataaaaagtggtaaaaagaa----tggagggttttgtttaatcaaaagaaattg 107  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  38016448 attttgtggtttgtattgggcaaacaatggtgattttgagaataaaaagtggtaaaaagaatggatggagggttttgtttaatcaaaagaaattg 38016354  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 47521199 - 47521264
Alignment:
Q  30 tattgagcaaacaatggtgattttgagaataaaaagtggtaaaaagaatggagggttttgtttaat 95  Q
    |||||| |||||||||||  |||||||||||||||||||||||||||| ||  |||| ||||||||    
T  47521199 tattgaacaaacaatggtatttttgagaataaaaagtggtaaaaagaacggcaggttctgtttaat 47521264  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 47521322 - 47521377
Alignment:
Q  185 tgtagaatcgcttttgttttaacaggttgtatataactgatttttagaatttcttta 241  Q
    ||||||||| ||||||||| |||||||||||||| | || |||||||||||| ||||    
T  47521322 tgtagaatctcttttgtttaaacaggttgtatatcattg-tttttagaatttgttta 47521377  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 46595122 - 46595069
Alignment:
Q  30 tattgagcaaacaatggtgattttgagaataaaaagtggtaaaaagaatggagg 83  Q
    |||||| |||||||||||  |||||||||||||||||||||||||||| |||||    
T  46595122 tattgaacaaacaatggtatttttgagaataaaaagtggtaaaaagaacggagg 46595069  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 46595014 - 46594945
Alignment:
Q  171 gatgcatttgttgttgtagaatcgcttttgttttaacaggttgtatataactgatttttagaatttcttta 241  Q
    |||||||||||   ||||||||| |||||||||||||||||||||||| |||| |||||| ||||| ||||    
T  46595014 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactg-tttttataatttgttta 46594945  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 4092060 - 4092115
Alignment:
Q  185 tgtagaatcgcttttgttttaacaggttgtatataactgatttttagaatttcttta 241  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||||||| ||||    
T  4092060 tgtagaatctcttttgttttaacaggttgtatatcactg-tttttagaatttgttta 4092115  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 4435716 - 4435768
Alignment:
Q  30 tattgagcaaacaatggtgattttgagaataaaaagtggtaaaaagaatggag 82  Q
    |||||| |||||||||||  |||||||||||||||||||||||||||| ||||    
T  4435716 tattgaacaaacaatggtatttttgagaataaaaagtggtaaaaagaacggag 4435768  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 4091937 - 4091984
Alignment:
Q  30 tattgagcaaacaatggtgattttgagaataaaaagtggtaaaaagaa 77  Q
    |||||| |||||||||||  ||||||||||||||||||||||||||||    
T  4091937 tattgaacaaacaatggtatttttgagaataaaaagtggtaaaaagaa 4091984  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 4435824 - 4435893
Alignment:
Q  171 gatgcatttgttgttgtagaatcgcttttgttttaacaggttgtatataactgatttttagaatttcttta 241  Q
    |||||||||||   ||||||||| |||||||||||||||||||||||| |||| |||||| ||||| ||||    
T  4435824 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactg-tttttataatttgttta 4435893  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 37719334 - 37719265
Alignment:
Q  171 gatgcatttgttgttgtagaatcgcttttgttttaacaggttgtatataactgatttttagaatttcttta 241  Q
    |||||||||||   ||||||||| |||||||||||||||||||||||| |||| |||||| ||||| ||||    
T  37719334 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactg-tttttataatttgttta 37719265  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 17950235 - 17950282
Alignment:
Q  95 tcaaaagaaattgctaaagaatgttgaaattatgaataaagctatgta 142  Q
    ||||||||||||| | ||| ||||||||| ||||||||||||||||||    
T  17950235 tcaaaagaaattgttgaaggatgttgaaactatgaataaagctatgta 17950282  T

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