View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6216_low_17 (Length: 286)
Name: NF6216_low_17
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6216_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 95 - 267
Target Start/End: Original strand, 39902016 - 39902186
Alignment:
| Q |
95 |
ggagtatctgtcactgtaatgagtttgtgaacctgattcatataccaaaataaacctatataattgtattctcaatcgttcactatattcgtgtattgtg |
194 |
Q |
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| T |
39902016 |
ggagtatctgtcactgtaatgagtttgtgaacctgattcgtataccaaaataaacctatataattgtattctcaatcgttcactatattcgtgtat--tg |
39902113 |
T |
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| Q |
195 |
taagcctttgagttacatattaccagtataaaataatataatgcacattgtctcgctgcactgtagaacgact |
267 |
Q |
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| T |
39902114 |
taagcctttgagttacatattaccagtataaaataatataatgcacattgtctcgctgcactgtagaacgact |
39902186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 39901889 - 39901986
Alignment:
| Q |
1 |
tagctgaaaacttggagaggtaaaaacaattaagagtcgtcctacagtgcagcaagacaatgtgcatgatattaatgcttagtcatgcagtttaggag |
98 |
Q |
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| T |
39901889 |
tagctgaaaacttggagaggtaaaaacaattaagagtcgtcctacagtgcagcaagacaatgtgcatgatattaatgcttagtcatgcagtttaggag |
39901986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 39902194 - 39902147
Alignment:
| Q |
27 |
caattaagagtcgtcctacagtgcagcaagacaatgtgcatgatatta |
74 |
Q |
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| T |
39902194 |
caattaagagtcgttctacagtgcagcgagacaatgtgcattatatta |
39902147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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