View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6216_low_19 (Length: 278)

Name: NF6216_low_19
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6216_low_19
NF6216_low_19
[»] chr6 (12 HSPs)
chr6 (103-243)||(26050653-26050793)
chr6 (103-243)||(26071822-26071962)
chr6 (107-233)||(26087389-26087515)
chr6 (107-233)||(25549634-25549762)
chr6 (103-163)||(25517982-25518040)
chr6 (55-99)||(26050574-26050618)
chr6 (55-99)||(26071743-26071787)
chr6 (3-39)||(25517870-25517906)
chr6 (3-39)||(26050538-26050574)
chr6 (3-39)||(26071707-26071743)
chr6 (182-243)||(6712408-6712469)
chr6 (55-95)||(29151880-29151920)
[»] chr8 (4 HSPs)
chr8 (175-243)||(9271118-9271186)
chr8 (175-243)||(32985791-32985859)
chr8 (183-236)||(31829301-31829354)
chr8 (175-243)||(32986638-32986706)
[»] chr4 (6 HSPs)
chr4 (176-243)||(13793525-13793592)
chr4 (175-243)||(39669613-39669681)
chr4 (175-243)||(51956352-51956420)
chr4 (175-243)||(13793958-13794026)
chr4 (175-243)||(14003758-14003825)
chr4 (175-219)||(14442822-14442866)
[»] chr1 (2 HSPs)
chr1 (180-238)||(26533957-26534015)
chr1 (175-243)||(7148233-7148301)
[»] chr3 (3 HSPs)
chr3 (173-243)||(28422950-28423019)
chr3 (175-243)||(29677805-29677872)
chr3 (186-227)||(50520252-50520293)
[»] chr2 (1 HSPs)
chr2 (175-224)||(37913760-37913809)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 103 - 243
Target Start/End: Original strand, 26050653 - 26050793
Alignment:
Q  103 tttgttttatctcttatctcaatatttgtgtgtaagctgcaattttccatagctttcttagttctgttattcgatgaaaatttttatagggactaaaact 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||    
T  26050653 tttgttttatctcttatctcaatatttgtgtgtaagctgcaattttccatagctttcttagctctgttatttgatgaaattttttatagggtctaaaact 26050752  T
Q  203 tgaaatttaaaacttttatagggatataaaacatatttaac 243  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26050753 tgaaatttaaaacttttatagggatataaaacatatttaac 26050793  T

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Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 103 - 243
Target Start/End: Original strand, 26071822 - 26071962
Alignment:
Q  103 tttgttttatctcttatctcaatatttgtgtgtaagctgcaattttccatagctttcttagttctgttattcgatgaaaatttttatagggactaaaact 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||    
T  26071822 tttgttttatctcttatctcaatatttgtgtgtaagctgcaattttccatagctttcttagctctgttatttgatgaaattttttatagggtctaaaact 26071921  T
Q  203 tgaaatttaaaacttttatagggatataaaacatatttaac 243  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26071922 tgaaatttaaaacttttatagggatataaaacatatttaac 26071962  T

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Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 107 - 233
Target Start/End: Original strand, 26087389 - 26087515
Alignment:
Q  107 ttttatctcttatctcaatatttgtgtgtaagctgcaattttccata-gctttcttagttctgttattcgatgaaaatttttatagggactaaaacttga 205  Q
    |||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||||||| ||||||||   ||||||||||||||||||||    
T  26087389 ttttatctcttatctcaatatttgtgtgtaagctgc-attttccaaaggctttcttagttatgttatttgatgaaaaaaattatagggactaaaacttga 26087487  T
Q  206 aatttaaaacttttatagggatataaaa 233  Q
    ||||||||| ||||||||| ||| ||||    
T  26087488 aatttaaaatttttataggaataaaaaa 26087515  T

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Target: chr6; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 107 - 233
Target Start/End: Original strand, 25549634 - 25549762
Alignment:
Q  107 ttttatctcttatctcaatatttgtgtgtaagctgcaattttccata-gctttcttagttctgttattcgat--gaaaatttttatagggactaaaactt 203  Q
    |||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||||||| |||   ||||  |||||||||||||||||||    
T  25549634 ttttatctcttatctcaatatttgtgtgtaagctgc-attttccaaaggctttcttagttatgttatttgatagaaaaaaatttatagggactaaaactt 25549732  T
Q  204 gaaatttaaaacttttatagggatataaaa 233  Q
    ||||||||||| ||||||||| ||| ||||    
T  25549733 gaaatttaaaatttttataggaataaaaaa 25549762  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 25517982 - 25518040
Alignment:
Q  103 tttgttttatctcttatctcaatatttgtgtgtaagctgcaattttccatagctttcttag 163  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||    
T  25517982 tttgttttatctcctatctcaatatttgtg--taagctgcaattttccatagctttcttag 25518040  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 26050574 - 26050618
Alignment:
Q  55 gatatcccaacagccacaatcatatacttctttgtgaaaaataag 99  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  26050574 gatatcccaacaaccacaatcatatacttctttgtgaaaaataag 26050618  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 26071743 - 26071787
Alignment:
Q  55 gatatcccaacagccacaatcatatacttctttgtgaaaaataag 99  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  26071743 gatatcccaacaaccacaatcatatacttctttgtgaaaaataag 26071787  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 25517870 - 25517906
Alignment:
Q  3 atcagcaacgtcgtaaaggcgatcatacattttattg 39  Q
    |||||||||||||||||||||||||||||||||||||    
T  25517870 atcagcaacgtcgtaaaggcgatcatacattttattg 25517906  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 26050538 - 26050574
Alignment:
Q  3 atcagcaacgtcgtaaaggcgatcatacattttattg 39  Q
    |||||||||||||||||||||||||||||||||||||    
T  26050538 atcagcaacgtcgtaaaggcgatcatacattttattg 26050574  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 26071707 - 26071743
Alignment:
Q  3 atcagcaacgtcgtaaaggcgatcatacattttattg 39  Q
    |||||||||||||||||||||||||||||||||||||    
T  26071707 atcagcaacgtcgtaaaggcgatcatacattttattg 26071743  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 6712469 - 6712408
Alignment:
Q  182 atttttatagggactaaaacttgaaatttaaaacttttatagggatataaaacatatttaac 243  Q
    ||||||||||||| |||||||| |||| ||||| |||||||| ||   ||||||||||||||    
T  6712469 atttttatagggaataaaacttaaaatctaaaaattttatagagaccaaaaacatatttaac 6712408  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 29151880 - 29151920
Alignment:
Q  55 gatatcccaacagccacaatcatatacttctttgtgaaaaa 95  Q
    ||||||||||||  |||| ||||||||||||||||||||||    
T  29151880 gatatcccaacaatcacagtcatatacttctttgtgaaaaa 29151920  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 9271118 - 9271186
Alignment:
Q  175 gatgaaaatttttatagggactaaaacttgaaatttaaaacttttatagggatataaaacatatttaac 243  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||| ||||  ||||||||||||||    
T  9271118 gatgaaaatttttatatggactaaaacttgaaatttaaaaattttatatggatcaaaaacatatttaac 9271186  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 32985859 - 32985791
Alignment:
Q  175 gatgaaaatttttatagggactaaaacttgaaatttaaaacttttatagggatataaaacatatttaac 243  Q
    |||||||| || |||||||||||||||||||||||| ||| ||||||||| |   ||||||||||||||    
T  32985859 gatgaaaaattgtatagggactaaaacttgaaatttgaaaattttataggaaccaaaaacatatttaac 32985791  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 31829354 - 31829301
Alignment:
Q  183 tttttatagggactaaaacttgaaatttaaaacttttatagggatataaaacat 236  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||||  |||||||    
T  31829354 tttttatagggactaaaacttgaaatttgaaaattttacagggatcaaaaacat 31829301  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 32986706 - 32986638
Alignment:
Q  175 gatgaaaatttttatagggactaaaacttgaaatttaaaacttttatagggatataaaacatatttaac 243  Q
    |||||||| || |||| ||||||||||| |||||||||||  ||||||||||   ||||||||||||||    
T  32986706 gatgaaaaattgtataaggactaaaactagaaatttaaaaaatttatagggaccaaaaacatatttaac 32986638  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 13793592 - 13793525
Alignment:
Q  176 atgaaaatttttatagggactaaaacttgaaatttaaaacttttatagggatataaaacatatttaac 243  Q
    |||||||||||||||||||| |||||||||||||| ||| |||||| |||||  ||||||||||||||    
T  13793592 atgaaaatttttatagggaccaaaacttgaaatttgaaaattttattgggatcaaaaacatatttaac 13793525  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 39669681 - 39669613
Alignment:
Q  175 gatgaaaatttttatagggactaaaacttgaaatttaaaacttttatagggatataaaacatatttaac 243  Q
    ||||||| |||||||  |||||||| ||| |||||||||| ||||||||||||  ||||||||||||||    
T  39669681 gatgaaattttttattaggactaaatcttaaaatttaaaaattttatagggatcaaaaacatatttaac 39669613  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 51956420 - 51956352
Alignment:
Q  175 gatgaaaatttttatagggactaaaacttgaaatttaaaacttttatagggatataaaacatatttaac 243  Q
    ||||||||  |||||| ||||||||| ||||||||||||  ||||||||||||  ||||||||||||||    
T  51956420 gatgaaaaaatttataaggactaaaatttgaaatttaaagattttatagggatcaaaaacatatttaac 51956352  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 13793958 - 13794026
Alignment:
Q  175 gatgaaaatttttatagggactaaaacttgaaatttaaaacttttatagggatataaaacatatttaac 243  Q
    ||||||| |||||||||| ||||||||||||||||| ||| | |||||||||   |||| |||||||||    
T  13793958 gatgaaattttttataggaactaaaacttgaaatttgaaaatattatagggaccaaaaatatatttaac 13794026  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 14003758 - 14003825
Alignment:
Q  175 gatgaaaatttttatagggactaaaacttgaaatttaaaacttttatagggatataaaacatatttaac 243  Q
    |||||||| |||||||  ||||||||||| |||| ||||| |||||||||||   ||||||||||||||    
T  14003758 gatgaaaaattttataacgactaaaacttaaaatctaaaaattttataggga-ccaaaacatatttaac 14003825  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 14442822 - 14442866
Alignment:
Q  175 gatgaaaatttttatagggactaaaacttgaaatttaaaactttt 219  Q
    ||||||| |||||||| |||||||||| |||||||||||| ||||    
T  14442822 gatgaaattttttatatggactaaaacatgaaatttaaaattttt 14442866  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 26534015 - 26533957
Alignment:
Q  180 aaatttttatagggactaaaacttgaaatttaaaacttttatagggatataaaacatat 238  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||||||||| |||||||||    
T  26534015 aaatttttataaggattaaaacttgaaatttaaaaattttatagggataaaaaacatat 26533957  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 7148301 - 7148233
Alignment:
Q  175 gatgaaaatttttatagggactaaaacttgaaatttaaaacttttatagggatataaaacatatttaac 243  Q
    |||| |||||||| || ||||||||||||||||||| | | |||||||  || | ||||||||||||||    
T  7148301 gatggaaatttttttaaggactaaaacttgaaatttgagaattttataaagacaaaaaacatatttaac 7148233  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 28422950 - 28423019
Alignment:
Q  173 tcgatgaaaatttttatagggactaaaacttgaaatttaaaacttttatagggatataaaacatatttaac 243  Q
    |||||||||||||| | |||||||||||||| |||||| ||| ||||||||||||| ||||| ||| ||||    
T  28422950 tcgatgaaaatttt-agagggactaaaacttaaaatttgaaaattttatagggataaaaaacttatgtaac 28423019  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 29677805 - 29677872
Alignment:
Q  175 gatgaaaatttttatagggactaaaacttgaaatttaaaacttttatagggatataaaacatatttaac 243  Q
    ||||||| ||||||| ||||||||| ||||||||||||||  |||||| ||||  ||||||||||||||    
T  29677805 gatgaaattttttattgggactaaaccttgaaatttaaaa-atttataaggatcaaaaacatatttaac 29677872  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 50520293 - 50520252
Alignment:
Q  186 ttatagggactaaaacttgaaatttaaaacttttatagggat 227  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||    
T  50520293 ttatagggagtaaaacttgaaatttgaaaattttatagggat 50520252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 37913760 - 37913809
Alignment:
Q  175 gatgaaaatttttatagggactaaaacttgaaatttaaaacttttatagg 224  Q
    ||||||||  || |||||||||||||||| |||||||||| |||||||||    
T  37913760 gatgaaaaacttcatagggactaaaacttaaaatttaaaaattttatagg 37913809  T

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