View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6216_low_20 (Length: 267)
Name: NF6216_low_20
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6216_low_20 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 267
Target Start/End: Complemental strand, 49273377 - 49273123
Alignment:
| Q |
14 |
agggtaatagaggactctataacaagaagaagtatcatactttgcatcagaaacaatctgactagtgcctgaagtgttgcataagaaaatagagcaggaa |
113 |
Q |
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| T |
49273377 |
agggtaatagaggactctataacaagaagaagtatcatactttgcatcagaaacaatctgactagtgcctgaagtgttgcataagaaaatagagcaggaa |
49273278 |
T |
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| Q |
114 |
tcatgcacataacatattttcaggtgacac-ttcttttactaaacaaaccatgatcacatattaattgtgatgcaccaagtctaagtcttttttacggcc |
212 |
Q |
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| T |
49273277 |
tcatgcccataacatattttcaggtgacactttcttttactaaacaaaccatgatcacatattaattgtgatgcaccaagtctaagtcttttttacggcc |
49273178 |
T |
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| Q |
213 |
tgacatgtatctagacacttttttgctttatgttggccatttttaactctcctct |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49273177 |
tgacatgtatctagacacttttttgctttatgttggccatttttaactctcctct |
49273123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 123
Target Start/End: Complemental strand, 49268336 - 49268244
Alignment:
| Q |
31 |
tataacaagaagaagtatcatactttgcatcagaaacaatctgactagtgcctgaagtgttgcataagaaaatagagcaggaatcatgcacat |
123 |
Q |
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| T |
49268336 |
tataacaagaggaagtatcaaactttgcatcagaaagtatctgaccagtgcctgaagcgttgcataagcaaatagagcaggaatcatgcacat |
49268244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 49274004 - 49274122
Alignment:
| Q |
14 |
agggtaatagaggactctataacaagaagaagtatcatactttgcatcagaaacaatctgactagtgcctgaagtgttgcataagaaaatagagcaggaa |
113 |
Q |
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||||||| |||||| ||||||||| | ||| ||||| ||||||||||||||| ||| ||| ||||||||||||||||||||| |||||||||||||| |
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| T |
49274004 |
agggtaacagaggaacctataacaacaggaaatatcaaactttgcatcagaaagtatcggacccgtgcctgaagtgttgcataagcaaatagagcaggaa |
49274103 |
T |
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| Q |
114 |
tcatgcacataacatattt |
132 |
Q |
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| T |
49274104 |
tcatgcacatagcatattt |
49274122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 49255629 - 49255509
Alignment:
| Q |
14 |
agggtaatagaggactctataacaagaagaagtatcatactttgcatcagaaacaatctgactagtgcctgaagtgttgcataagaaaatagagcaggaa |
113 |
Q |
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||||||| |||||| |||||||||| |||| | || ||||||||| ||||| ||||||| ||||||||||| |||||||||| ||| |||||||||| |
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| T |
49255629 |
agggtaacagaggaacttataacaagaggaagaaccaaactttgcataagaaagtatctgaccagtgcctgaagagttgcataagcaaaaagagcaggaa |
49255530 |
T |
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| Q |
114 |
tcatgcacataacatattttc |
134 |
Q |
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||||||||||| || |||||| |
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| T |
49255529 |
tcatgcacatagcaaattttc |
49255509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 29356859 - 29356756
Alignment:
| Q |
31 |
tataacaagaagaagtatcatactttgcatcagaaacaatctgactagtgcctgaagtgttgcataagaaaatagagcaggaatcatgcacataacatat |
130 |
Q |
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|||||||||| ||| ||||| ||||||||||||||| || |||| | || | || | |||||||||| ||||||||||||||||||||||||| || || |
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| T |
29356859 |
tataacaagatgaactatcaaactttgcatcagaaagtatatgaccattggccgaggagttgcataagcaaatagagcaggaatcatgcacatagcaaat |
29356760 |
T |
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| Q |
131 |
tttc |
134 |
Q |
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|||| |
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| T |
29356759 |
tttc |
29356756 |
T |
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