View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6216_low_23 (Length: 251)
Name: NF6216_low_23
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6216_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 18010586 - 18010832
Alignment:
| Q |
1 |
ctgaggttggattttaaatgattctttgatcataagtaataggattacaaacatttgcatctacagataaactctagaaaagtttgtgattgtgattaat |
100 |
Q |
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| T |
18010586 |
ctgaggttggattttaaatgattctttgatcataagtaataggattacaaacatttgcatctaaagataaacttcagaaaagtttgtgattgtgattaat |
18010685 |
T |
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| Q |
101 |
aaaagaggcgtcatttgaaatttgtgtcaattggggttgaggattgaatgattcttcaatcttcaacttca----atatataccaatctcaaatgacgcc |
196 |
Q |
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| T |
18010686 |
aaaagaggcgtcatttgaaattggtgtcaattggggttgaggattgaatgattcttcaatcttcaacttcaatagatatataccaatcccaaacgacgtc |
18010785 |
T |
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| Q |
197 |
gcttttgtaagtcacaatcataaatttttctagatggcttctctgct |
243 |
Q |
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| T |
18010786 |
gcttttgtaagtcacaatcataaatttttctagatggcttctctgct |
18010832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 17922906 - 17922664
Alignment:
| Q |
1 |
ctgaggttggattttaaatgattctttg---atcataagtaataggattacaaacatttgcatctacagataaac--tctagaaaagtttgtgattgtga |
95 |
Q |
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| T |
17922906 |
ctgagattggattttgaatgattttttttttatcttaagcaatatgattacaagcattggcaactgcaaataaaccctctagaaaagtctgtgattttga |
17922807 |
T |
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| Q |
96 |
ttaataaaagaggcgtcatttgaaatttgtgtcaattggggttgaggattgaatgattcttcaatcttcaacttcaatatataccaatctcaaatgacgc |
195 |
Q |
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| T |
17922806 |
cggataaaagaggagtcgtttagaattggtatcgattggagttgcgtattgaatgattcttcaatcttcaactcaagtagataccaatctcaaacggcgc |
17922707 |
T |
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| Q |
196 |
cgcttttgtaagtcacaatcataaatttttctagatggcttct |
238 |
Q |
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| T |
17922706 |
cgcttttataaatcacaatcataaatttttctaaagggcttct |
17922664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 18010885 - 18010844
Alignment:
| Q |
10 |
gattttaaatgattctttgatcataagtaataggattacaaa |
51 |
Q |
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| T |
18010885 |
gattttcaatgattctttgatcataagcaatatgattacaaa |
18010844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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