View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6216_low_24 (Length: 250)
Name: NF6216_low_24
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6216_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 49270656 - 49270892
Alignment:
| Q |
1 |
aatatcaaatctcagatactataaagactaagggggaataagttttcacgcggagaaatagttataaaatagatgatannnnnnnncttctcagttcaat |
100 |
Q |
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| T |
49270656 |
aatatcaaatctcagatactataaagactaagggggaaaaagttttcacgcggagaaatagttataaaatagatgatattttttttcttctcagttcaat |
49270755 |
T |
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| Q |
101 |
ttttggtaaggctctgcagtgttagtgtagcctttatcatatcatgatgatgtaaaagaaattgaattatttcatctattccattaaattggaaatgaac |
200 |
Q |
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| T |
49270756 |
ttttggtaaggctctgcagtgttagtgtatcctttatcatatcatgatgatgtaaaagaaattgaatgatttcatctcttcaattaaattggaaatgaac |
49270855 |
T |
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| Q |
201 |
atgagccaagtgagaatgaaaaatgtttgtttttctg |
237 |
Q |
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| T |
49270856 |
atgagccaagtgagaatgaaaaatgtttgtttttctg |
49270892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 94 - 234
Target Start/End: Original strand, 49272819 - 49272959
Alignment:
| Q |
94 |
gttcaatttttggtaaggctctgcagtgttagtgtagcctttatcatatcatgatgatgtaaaagaaattgaattatttcatctattcca-ttaaattgg |
192 |
Q |
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| T |
49272819 |
gttcaatttttgttaag-ctctgcagtgttagtgtaacttttatcatattatgatgatgtaaaagaaattgaatgagttcatcttttcaatttcaatcgg |
49272917 |
T |
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| Q |
193 |
aaatgaacatgagccaagtgagaatgaaaaatgtttgttttt |
234 |
Q |
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| T |
49272918 |
agatgaatttgagccaagtgagaatgtaaaatgtttgttttt |
49272959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 49272756 - 49272788
Alignment:
| Q |
1 |
aatatcaaatctcagatactataaagactaagg |
33 |
Q |
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| T |
49272756 |
aatatcaaatctcagatactataaggactaagg |
49272788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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