View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6216_low_27 (Length: 238)
Name: NF6216_low_27
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6216_low_27 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 34624888 - 34624667
Alignment:
| Q |
17 |
atgaatcaaaaaatttcgagtagcatgaacatatctcaccaagatggtttctaaattgatcggtcccttgaaactatactaagcaaatgtatagaacata |
116 |
Q |
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| T |
34624888 |
atgaataaaaaattttcgagtagcatgaacatatctcaccaagatggtttctaaattgatcggtcccttgaaactatactaagcaaatgtatagaacata |
34624789 |
T |
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| Q |
117 |
gttttcatatcgttattgttttgaagtttcatctttgtgaacctaacacgcccatatgagtcgattgacaaaaaatgatactcatcacagactgcccttt |
216 |
Q |
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| T |
34624788 |
gttttcatatcgttattgttttgaagtttcatctttgtgaacctaacacgcccatatgagtcgattgacaaaaaatgatactcatcacagactacccttt |
34624689 |
T |
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| Q |
217 |
ttgtatcactgtagatgagaat |
238 |
Q |
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| T |
34624688 |
ttgtatcaccgtagatgagaat |
34624667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 34554045 - 34554105
Alignment:
| Q |
88 |
aactatactaagcaaatgtatagaacatagttttcatatcgttattgttttgaagtttcat |
148 |
Q |
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| T |
34554045 |
aactatactcaacaaatatagataacatagttttcacatcgttgttgttttgaagtttcat |
34554105 |
T |
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