View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6216_low_5 (Length: 456)
Name: NF6216_low_5
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6216_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 165 - 446
Target Start/End: Original strand, 44494680 - 44494961
Alignment:
| Q |
165 |
gtgatggcatgtataatatctgtcttttcatcggttgatataatgttgttaaaacataaacaaacaatactcgattaaattttaatattataattttctt |
264 |
Q |
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| T |
44494680 |
gtgatggcatgtataatatctgtcttttcatcggttgatataatgttgttaaaacataaacaaacaatactcgattaaattttaatattataattttctt |
44494779 |
T |
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| Q |
265 |
aagaggctaaaagcaaaatttatcatacaacttaaaaatggattcacttaattgctaggaaataaaacccacataagttaatatgatatgccaaaaatta |
364 |
Q |
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| T |
44494780 |
aagaggctaaaagcaaaatttatcatacaacttaaaaatggattcacttaattgctaggaaataaaacccacataagttaatatgatatgccaaaaatta |
44494879 |
T |
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| Q |
365 |
actaaattatagtataaaatataaaaaagagaatagtgtattaacatttaacggtgcagttaaatattacccctggcctttg |
446 |
Q |
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| T |
44494880 |
actaaattatagtataaaatataaaaaagagaatagtgtattaacatttaacggtgcagttaaatattacccctggcctttg |
44494961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 44494529 - 44494599
Alignment:
| Q |
19 |
caaatctcatttgaaaggttttcgttttaaaatttatcaatgatgtgttcattctcatgggtgcttagaac |
89 |
Q |
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| T |
44494529 |
caaatctcatttgaaaggttttcgttttaaaatttatcaatgatgtgatcattctcatgggtgcttagaac |
44494599 |
T |
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