View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6216_low_6 (Length: 444)
Name: NF6216_low_6
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6216_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 3838927 - 3838504
Alignment:
| Q |
19 |
agcacagcttggtgttattacctgagatggaagtataggaaataatggaattgatagcagacctccagtgaatttgcttgtcttgaaatctagcttgatt |
118 |
Q |
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| T |
3838927 |
agcacagcttggtgttattacctgagatggaagtataggaaataatggaattgatagcagacctccagtgaatttgcttgtcttgaaatctagcttgatt |
3838828 |
T |
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| Q |
119 |
tctcgagtacgagatgatggaaatagtgttgatgactgcaaccttagaaactaacctgcactgaggtgtaaattgctccccaatcttccaaatgttatca |
218 |
Q |
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| T |
3838827 |
tctcgagtaccagatgatggaaatagtgttgatgactgcaaccttagaaactaacctgcactgaggtgtaaattgctccccaatcttccaaatgttatca |
3838728 |
T |
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| Q |
219 |
atggcgggaagattaatattgagaagattggcaagccaggtccaaagtttcagtgcaaaagggcactgaaagaaaagatgagatgttgtttcctcagaat |
318 |
Q |
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| T |
3838727 |
atggcgggaagattaatattgagaagattagcaagccaggtccaaagtttcagtgcaaaagggcactgaaagaaaagatgagatgttgtttcctcagaat |
3838628 |
T |
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| Q |
319 |
tgaga---------cagatggaagcaagattgctacatctatcttgtaacttctcatcagttgggagcctatcgtgcattagcctccaagcaagaactga |
409 |
Q |
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| T |
3838627 |
tgagaaagatgctgcagatggaagcaagattgctacctctatcttgtaacttctcatcagttgggagcctatcgtgcattagcctccaagcaagaactga |
3838528 |
T |
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| Q |
410 |
cttagtttatatatgatcattcat |
433 |
Q |
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| T |
3838527 |
cttagtttatatatgatcattcat |
3838504 |
T |
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