View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6216_low_8 (Length: 410)
Name: NF6216_low_8
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6216_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 29685052 - 29684677
Alignment:
| Q |
19 |
gaagttgtagatctagtgtgtggttttgtttttctaggtgagaccaagtgagaactattatttttcatcaaatcaataaaagaagtatccattggcaaac |
118 |
Q |
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| T |
29685052 |
gaagttgcagatctagtgtgtggttttgtttttctaggtgagaccaagtgagaactattatttttcatcaaatcaataaaagaagtatccattggcaaac |
29684953 |
T |
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| Q |
119 |
aataacacattaatataatcaaattgagggtgatgagaccaaaccgttccaaatcgaagctgcttatnnnnnnnnnn-tagtctaaagcccagacgtata |
217 |
Q |
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| T |
29684952 |
aataacacattaatataatcaaattgagggtgatgagacgaaaccgttccaaatcgaagccgcttataaaaaaaattatagtctaaagcccagacgtata |
29684853 |
T |
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| Q |
218 |
atcgccaaacattcattcaaattgattgcattttctcttttcacggttgtaatggaaatttaattgaagttgctggtcaaaattaaacctgtattctacc |
317 |
Q |
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| T |
29684852 |
atcgccaaacattcattcaaattgattgcattttctcttttcacggttgtaatggaaatttaattgaagttgctggtcaaaattaaacctgtattctacc |
29684753 |
T |
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| Q |
318 |
ttggctatttaacccaatcaaagtaaaaacaataaaagcataaaggcaactataatctttgttcaattgcaccatg |
393 |
Q |
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| T |
29684752 |
ttggctatttaacccaatcaaaataaaaacaataaaagcataaaggcaactataatctttgttcaattgcaccatg |
29684677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 10590798 - 10590746
Alignment:
| Q |
75 |
attatttttcatcaaatcaataaaagaagtatccattggcaaacaataacaca |
127 |
Q |
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|||||||||| |||||||||||||| | |||| |||| |||||||||||||| |
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| T |
10590798 |
attatttttcttcaaatcaataaaatatgtatacattaacaaacaataacaca |
10590746 |
T |
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