View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6216_low_9 (Length: 382)

Name: NF6216_low_9
Description: NF6216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6216_low_9
NF6216_low_9
[»] chr3 (11 HSPs)
chr3 (16-239)||(51329691-51329897)
chr3 (91-212)||(27186088-27186209)
chr3 (318-371)||(51329557-51329610)
chr3 (139-206)||(9557414-9557481)
chr3 (97-168)||(27189035-27189106)
chr3 (75-206)||(47867526-47867656)
chr3 (107-157)||(16868966-16869016)
chr3 (73-153)||(30288161-30288241)
chr3 (318-371)||(37267778-37267831)
chr3 (75-151)||(24398555-24398631)
chr3 (141-189)||(11232720-11232768)
[»] scaffold0039 (1 HSPs)
scaffold0039 (97-239)||(106783-106925)
[»] chr7 (10 HSPs)
chr7 (75-239)||(15336393-15336557)
chr7 (76-155)||(35612003-35612082)
chr7 (97-183)||(15901092-15901178)
chr7 (318-371)||(42026098-42026151)
chr7 (75-160)||(47317779-47317864)
chr7 (109-184)||(13954067-13954142)
chr7 (143-206)||(16798654-16798717)
chr7 (137-213)||(3614443-3614520)
chr7 (318-371)||(15336660-15336713)
chr7 (76-125)||(27870303-27870352)
[»] chr4 (10 HSPs)
chr4 (69-184)||(10311403-10311518)
chr4 (73-184)||(49815706-49815817)
chr4 (318-371)||(48093517-48093570)
chr4 (72-160)||(43036466-43036554)
chr4 (74-212)||(14968405-14968543)
chr4 (318-371)||(2333036-2333089)
chr4 (73-154)||(43035765-43035846)
chr4 (134-180)||(21410128-21410174)
chr4 (73-158)||(19438324-19438409)
chr4 (109-157)||(17482702-17482750)
[»] chr6 (2 HSPs)
chr6 (75-158)||(32132804-32132887)
chr6 (75-159)||(7822331-7822415)
[»] chr2 (10 HSPs)
chr2 (141-215)||(26173115-26173189)
chr2 (318-371)||(44073211-44073264)
chr2 (175-212)||(21831124-21831161)
chr2 (141-213)||(21833902-21833974)
chr2 (138-184)||(33403074-33403120)
chr2 (102-151)||(31173408-31173457)
chr2 (73-158)||(33405769-33405854)
chr2 (102-158)||(31184456-31184512)
chr2 (111-210)||(15738649-15738748)
chr2 (99-206)||(31854182-31854289)
[»] chr1 (10 HSPs)
chr1 (72-212)||(39063143-39063283)
chr1 (75-153)||(33216334-33216412)
chr1 (109-206)||(36791485-36791582)
chr1 (77-184)||(13282568-13282675)
chr1 (91-158)||(17373986-17374053)
chr1 (91-181)||(13287558-13287648)
chr1 (72-158)||(21762040-21762126)
chr1 (73-183)||(37770750-37770860)
chr1 (140-235)||(16082867-16082962)
chr1 (85-184)||(31869969-31870068)
[»] scaffold0146 (2 HSPs)
scaffold0146 (75-212)||(24432-24569)
scaffold0146 (99-160)||(32321-32382)
[»] chr8 (11 HSPs)
chr8 (74-212)||(6253301-6253439)
chr8 (318-371)||(8037014-8037067)
chr8 (318-371)||(33074576-33074629)
chr8 (74-187)||(44373990-44374103)
chr8 (136-184)||(775653-775701)
chr8 (136-184)||(781307-781355)
chr8 (75-155)||(6253584-6253664)
chr8 (100-184)||(34587657-34587741)
chr8 (111-210)||(18701604-18701703)
chr8 (71-187)||(16583186-16583302)
chr8 (144-212)||(21511112-21511180)
[»] chr5 (2 HSPs)
chr5 (99-187)||(42449950-42450038)
chr5 (77-160)||(36759191-36759274)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 7e-68; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 51329897 - 51329691
Alignment:
Q  16 gaatgaactaatgtccatattgcattcaaagtgttttccatgttcatgaaaagtttaaagaaaattgattttttaacatttataacttcacaatgacaca 115  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  51329897 gaatgaactaatgtccatattgcattcaa-gtgttttctatgttcatgaaaagtttaaagaaaattgattttttaacatttataacttcacaatgacata 51329799  T
Q  116 agaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaacaattaactgccgttgaggccaacggtagttaactaccgctaca 215  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||  ||                |||||||||||||||||||||||    
T  51329798 agaaaattacccaaaagttctcagcggtagttaactaccgttgaacaatccgacaactgtt----------------aacggtagttaactaccgctaca 51329715  T
Q  216 tgcgttctgagattcaacctcttt 239  Q
    ||||||||| ||||||||||||||    
T  51329714 tgcgttctgggattcaacctcttt 51329691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 27186088 - 27186209
Alignment:
Q  91 acatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaacaattaactgccgttgagg 190  Q
    ||||| ||||||||||||||||| | | |||||| |||||||| | | ||||||||||||||||||||||||| ||||||||| |||| || || ||| |    
T  27186088 acattcataacttcacaatgacatatgtaaattaactaaaagtccccggcggtagttaactaccgttgagcaagccggcaacagttaattgtcgctgatg 27186187  T
Q  191 ccaacggtagttaactaccgct 212  Q
     ||||||| ||||||| |||||    
T  27186188 tcaacggttgttaactgccgct 27186209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 51329610 - 51329557
Alignment:
Q  318 ataaaaaccctcacattctcacattttctcacattctttcctccttactttcat 371  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  51329610 ataaaaaccctcacattctcgcattttctcacattctttcctccttactctcat 51329557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 9557481 - 9557414
Alignment:
Q  139 gcggtagttaactaccgttgagcaatccggcaacaattaactgccgttgaggccaacggtagttaact 206  Q
    |||||||||||||||||||  |||| ||||||||| |||||||||| || ||||| ||||||||||||    
T  9557481 gcggtagttaactaccgtttggcaaaccggcaacatttaactgccgctgtggccagcggtagttaact 9557414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 27189106 - 27189035
Alignment:
Q  97 ataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccgg 168  Q
    |||| |||||||| ||||||||||||||||||||||  |  ||| |||||||||||||||||||||| ||||    
T  27189106 ataagttcacaataacacaagaaaattacctaaaagcccctagcagtagttaactaccgttgagcaagccgg 27189035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 206
Target Start/End: Original strand, 47867526 - 47867656
Alignment:
Q  75 gaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaacaa 174  Q
    |||||||  |||| ||| ||| ||||| ||||||||||||| |||||||| |||||||  | ||| |||| ||||||||||||||| || ||| || ||     
T  47867526 gaaaattacttttctaatattcataacatcacaatgacacatgaaaattaactaaaag-ccccagtggtaattaactaccgttgaggaagccgacatcag 47867624  T
Q  175 ttaactgccgttgaggccaacggtagttaact 206  Q
    ||||||| || ||| |||| ||||||||||||    
T  47867625 ttaactgtcgctgaagccagcggtagttaact 47867656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 16868966 - 16869016
Alignment:
Q  107 aatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgtt 157  Q
    |||||||||||||||||||| |||||| |||||||||| ||||||||||||    
T  16868966 aatgacacaagaaaattacccaaaagtcctcagcggtaattaactaccgtt 16869016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 30288241 - 30288161
Alignment:
Q  73 aagaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactac 153  Q
    ||||||||||||||| | ||||| | ||||||||||||||||||| || ||||  || ||  |||||||||||||||||||    
T  30288241 aagaaaattgattttctgacattgagaacttcacaatgacacaagtaatttactaaatagccctcagcggtagttaactac 30288161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 37267831 - 37267778
Alignment:
Q  318 ataaaaaccctcacattctcacattttctcacattctttcctccttactttcat 371  Q
    |||||||||||||||||||||||| | |||||||||| || |||||||| ||||    
T  37267831 ataaaaaccctcacattctcacatctcctcacattctctcatccttactctcat 37267778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 24398631 - 24398555
Alignment:
Q  75 gaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaact 151  Q
    |||||||| |||| ||||||  | || |||||||||||||| |||||||||||||| |  |||||||| ||||||||    
T  24398631 gaaaattgcttttctaacatacaaaagttcacaatgacacatgaaaattacctaaaggccctcagcggcagttaact 24398555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 11232768 - 11232720
Alignment:
Q  141 ggtagttaactaccgttgagcaatccggcaacaattaactgccgttgag 189  Q
    |||||||||||||||||||||||  || ||||| |||||| ||||||||    
T  11232768 ggtagttaactaccgttgagcaaatcgacaacagttaactaccgttgag 11232720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 97 - 239
Target Start/End: Original strand, 106783 - 106925
Alignment:
Q  97 ataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaacaattaactgccgttgaggccaacg 196  Q
    |||||||||||||||||||| ||||||||| |||||  |  ||||||||||||||||||||||  || ||| ||||| |||||||||| ||   ||| ||    
T  106783 ataacttcacaatgacacaaaaaaattacccaaaagcccctagcggtagttaactaccgttgacaaagccgacaacagttaactgccgctggcaccagcg 106882  T
Q  197 gtagttaactaccgctacatgcgttctgagattcaacctcttt 239  Q
    |||||||||||||||||| ||||||||| ||||||||||||||    
T  106883 gtagttaactaccgctacgtgcgttctgggattcaacctcttt 106925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 15336393 - 15336557
Alignment:
Q  75 gaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaacaa 174  Q
    |||||||| |||| | ||||| | ||||||||||| ||||||||||||||  ||||||  |  |||| |||||||||||||||| || | |||||||||     
T  15336393 gaaaattgcttttctgacattgagaacttcacaataacacaagaaaattatgtaaaagccccaagcgatagttaactaccgttgggctaaccggcaacag 15336492  T
Q  175 ttaactgccgttgaggccaacggtagttaactaccgctacatgcgttctgagattcaacctcttt 239  Q
    |||||||||| ||  |||| ||||| |||||| ||||||| ||||||||| ||||||||||||||    
T  15336493 ttaactgccgctggagccagcggtaattaactgccgctacgtgcgttctgggattcaacctcttt 15336557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 35612082 - 35612003
Alignment:
Q  76 aaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccg 155  Q
    ||||||| |||| | ||||| ||||||||||||||| | |||||||||| | ||| | || |||||||||||||||||||    
T  35612082 aaaattgcttttctgacattgataacttcacaatgaaataagaaaattatccaaaggctcccagcggtagttaactaccg 35612003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 15901178 - 15901092
Alignment:
Q  97 ataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaacaattaactgcc 183  Q
    |||||||||||||||||||||||||||||  |||||  | |||| ||| |||| |||||||||| || |||| | || |||||||||    
T  15901178 ataacttcacaatgacacaagaaaattactcaaaagcccccagcagtaattaattaccgttgagaaagccggtagcagttaactgcc 15901092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 42026098 - 42026151
Alignment:
Q  318 ataaaaaccctcacattctcacattttctcacattctttcctccttactttcat 371  Q
    ||||||||| ||| |||||||||||| |||||||||| ||||||||||| ||||    
T  42026098 ataaaaaccttcatattctcacatttcctcacattctctcctccttactctcat 42026151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 47317864 - 47317779
Alignment:
Q  75 gaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgag 160  Q
    |||||||| |||| | ||||| | ||||| ||||||||||||| ||| ||| |||| |  | ||||||||||||||||||||||||    
T  47317864 gaaaattgcttttctgacattgaaaactttacaatgacacaagtaaaatacttaaatgcccccagcggtagttaactaccgttgag 47317779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 13954142 - 13954067
Alignment:
Q  109 tgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaacaattaactgccg 184  Q
    ||||||| |||||||||||||||  || ||||||||||||| |||||||  |||| ||| || || ||||||||||    
T  13954142 tgacacatgaaaattacctaaaacctcccagcggtagttaattaccgttctgcaaaccgacatcagttaactgccg 13954067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 16798717 - 16798654
Alignment:
Q  143 tagttaactaccgttgagcaatccggcaacaattaactgccgttgaggccaacggtagttaact 206  Q
    ||||||||||| |||| |||| |||||| || |||||||||| || || |||||||||||||||    
T  16798717 tagttaactactgttgggcaaaccggcatcagttaactgccgctggggtcaacggtagttaact 16798654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 213
Target Start/End: Original strand, 3614443 - 3614520
Alignment:
Q  137 cagcggtagttaactaccgttgagcaatccggcaacaattaactgccgttgaggc-caacggtagttaactaccgcta 213  Q
    |||||||||||||||||||||  |||| |||||  || ||||| |||||||   | ||||||||||||||||||||||    
T  3614443 cagcggtagttaactaccgttctgcaaaccggcggcagttaacagccgttggcactcaacggtagttaactaccgcta 3614520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 15336660 - 15336713
Alignment:
Q  318 ataaaaaccctcacattctcacattttctcacattctttcctccttactttcat 371  Q
    |||| ||||||||||||||||  ||| |||||||||| ||||||||||| ||||    
T  15336660 ataagaaccctcacattctcaattttcctcacattctctcctccttactctcat 15336713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 27870352 - 27870303
Alignment:
Q  76 aaaattgattttttaacatttataacttcacaatgacacaagaaaattac 125  Q
    ||||||| |||||| ||||| ||||||||||| ||||||||| |||||||    
T  27870352 aaaattgcttttttgacattgataacttcacattgacacaagtaaattac 27870303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 10311403 - 10311518
Alignment:
Q  69 tttaaagaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccgg 168  Q
    |||| ||||||||||| || | ||||  ||||||||||||| ||||| | ||||||||||||||||| |||||||||||||||||| | |||||| |||     
T  10311403 tttacagaaaattgatgttctgacatacataacttcacaataacacatggaaattacctaaaagttcccagcggtagttaactaccatcgagcaagccga 10311502  T
Q  169 caacaattaactgccg 184  Q
    ||||| ||||||||||    
T  10311503 caacagttaactgccg 10311518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 184
Target Start/End: Original strand, 49815706 - 49815817
Alignment:
Q  73 aagaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaac 172  Q
    |||||||||  |||| ||||||| | |||||||||||||| |||||||||||| ||||||  |||| ||||||||||||||||||| || | |||||| |    
T  49815706 aagaaaatttcttttctaacattgagaacttcacaatgacgcaagaaaattacgtaaaagccctcaacggtagttaactaccgttgggctaaccggcagc 49815805  T
Q  173 aattaactgccg 184  Q
    | ||||||||||    
T  49815806 agttaactgccg 49815817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 48093517 - 48093570
Alignment:
Q  318 ataaaaaccctcacattctcacattttctcacattctttcctccttactttcat 371  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  48093517 ataaaaaccctcacattctcacatttcctcacattctctcctccttactctcat 48093570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 43036554 - 43036466
Alignment:
Q  72 aaagaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgag 160  Q
    ||||||||||| |||||| ||||  | ||||||||||||||||||| ||| ||| |||| |  |  |||||||||||||||||||||||    
T  43036554 aaagaaaattgcttttttgacataaaaaacttcacaatgacacaagtaaaatacttaaatgcccctagcggtagttaactaccgttgag 43036466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 212
Target Start/End: Original strand, 14968405 - 14968543
Alignment:
Q  74 agaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaaca 173  Q
    ||||||||| ||||   ||||| ||||||||||| ||||||| | || ||||  ||||  || |||||||||||||||| |||||||  ||||| | |||    
T  14968405 agaaaattgcttttcagacattgataacttcacattgacacatgtaatttactaaaaaactcccagcggtagttaactatcgttgagacatccgacgaca 14968504  T
Q  174 attaactgccgttgaggccaacggtagttaactaccgct 212  Q
     |||| ||||| |||  ||| |||||||||||| |||||    
T  14968505 gttaattgccgctgacaccagcggtagttaactgccgct 14968543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 2333036 - 2333089
Alignment:
Q  318 ataaaaaccctcacattctcacattttctcacattctttcctccttactttcat 371  Q
    |||| ||||||||||||||||||||| || ||||||| ||||||||||| ||||    
T  2333036 ataagaaccctcacattctcacatttccttacattctctcctccttactctcat 2333089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 43035765 - 43035846
Alignment:
Q  73 aagaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactacc 154  Q
    |||||||||| |||| | ||||| |||| |||||| ||||||||| ||| |||||||| || | | ||||||||||||||||    
T  43035765 aagaaaattgcttttctgacattgataagttcacattgacacaagtaaaatacctaaatgtccccggcggtagttaactacc 43035846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 21410128 - 21410174
Alignment:
Q  134 tctcagcggtagttaactaccgttgagcaatccggcaacaattaact 180  Q
    |||||| ||||||||||||||||| |||||||||||| || ||||||    
T  21410128 tctcagtggtagttaactaccgttcagcaatccggcatcagttaact 21410174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 158
Target Start/End: Original strand, 19438324 - 19438409
Alignment:
Q  73 aagaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttg 158  Q
    |||||||||| |||| | | ||| | ||||||||||||||||||| || ||||  || ||  | ||||||||||||||||||||||    
T  19438324 aagaaaattgcttttatgatattgagaacttcacaatgacacaagtaatttactaaatagcccccagcggtagttaactaccgttg 19438409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 17482702 - 17482750
Alignment:
Q  109 tgacacaagaaaattacctaaaagttctcagcggtagttaactaccgtt 157  Q
    |||||||||||| |||| ||||||  | |||||||||||||||||||||    
T  17482702 tgacacaagaaatttacgtaaaagcccccagcggtagttaactaccgtt 17482750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 32132804 - 32132887
Alignment:
Q  75 gaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttg 158  Q
    |||||||| |||| ||||||| ||||||||||||||||| |||||||||||| |||||   |||||||||||||||||||||||    
T  32132804 gaaaattgtttttctaacattcataacttcacaatgacataagaaaattacccaaaagccatcagcggtagttaactaccgttg 32132887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 7822415 - 7822331
Alignment:
Q  75 gaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttga 159  Q
    ||||||||||||| | ||||| | ||||||||||| ||||||||||||||| ||||||| |  || ||| |||||||||||||||    
T  7822415 gaaaattgattttatgacattgagaacttcacaataacacaagaaaattacgtaaaagtcccaagtggttgttaactaccgttga 7822331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 26173189 - 26173115
Alignment:
Q  141 ggtagttaactaccgttgagcaatccggcaacaattaactgccgttgaggccaacggtagttaactaccgctaca 215  Q
    |||||||||||||||||| |  ||||||||||| |||||||||| |||||||||| |||||||||||||||||||    
T  26173189 ggtagttaactaccgttgtgagatccggcaacagttaactgccgctgaggccaacagtagttaactaccgctaca 26173115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 44073211 - 44073264
Alignment:
Q  318 ataaaaaccctcacattctcacattttctcacattctttcctccttactttcat 371  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  44073211 ataaaaaccctcacattctcacatttcctcacattctctcctccttactctcat 44073264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 21831161 - 21831124
Alignment:
Q  175 ttaactgccgttgaggccaacggtagttaactaccgct 212  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21831161 ttaactgccgttgaggccaacggtagttaactaccgct 21831124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 213
Target Start/End: Complemental strand, 21833974 - 21833902
Alignment:
Q  141 ggtagttaactaccgttgagcaatccggcaacaattaactgccgttgaggccaacggtagttaactaccgcta 213  Q
    |||||||||||||||||| |  ||| ||||||| |||||||||| |||||||| |||| | ||||||||||||    
T  21833974 ggtagttaactaccgttgtgagatctggcaacagttaactgccgctgaggccagcggtggctaactaccgcta 21833902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 33403074 - 33403120
Alignment:
Q  138 agcggtagttaactaccgttgagcaatccggcaacaattaactgccg 184  Q
    |||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  33403074 agcggtagttaactaccgttgagcaagccgacaacagttaactgccg 33403120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 31173408 - 31173457
Alignment:
Q  102 ttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaact 151  Q
    |||||||||||||| ||||||||||||||||  |||| ||||||||||||    
T  31173408 ttcacaatgacacatgaaaattacctaaaagccctcaacggtagttaact 31173457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 33405854 - 33405769
Alignment:
Q  73 aagaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttg 158  Q
    |||||||||| | || | ||||| ||||||||||||||||| | ||||||||||||||||  | || ||||||| |||||| ||||    
T  33405854 aagaaaattgttgttctgacattcataacttcacaatgacatatgaaaattacctaaaagcccccaacggtagtcaactacagttg 33405769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 31184512 - 31184456
Alignment:
Q  102 ttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttg 158  Q
    |||||||||||||||| ||||||| | | ||| | ||||||||||||||||||||||    
T  31184512 ttcacaatgacacaagtaaattacattagagtccccagcggtagttaactaccgttg 31184456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 15738748 - 15738649
Alignment:
Q  111 acacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaacaattaactgccgttgaggccaacggtagttaactaccg 210  Q
    ||||| ||||||| | ||||||  |||||||||||||||||||||||||| || || | | || |||||||||| ||    ||| |||||||||||||||    
T  15738748 acacatgaaaattccttaaaagccctcagcggtagttaactaccgttgaggaagccagtagcagttaactgccgctggcctcaatggtagttaactaccg 15738649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 31854289 - 31854182
Alignment:
Q  99 aacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaacaattaactgccgttgaggccaacggt 198  Q
    ||||||||||||||||||| ||| |||  |||  | | ||||| ||||||| ||||||||||  | |||||| || |||||||||||||  | || ||||    
T  31854289 aacttcacaatgacacaagtaaaatactgaaatatccccagcgatagttaattaccgttgagttaaccggcatcagttaactgccgttggtgtcagcggt 31854190  T
Q  199 agttaact 206  Q
    ||||||||    
T  31854189 agttaact 31854182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 72 - 212
Target Start/End: Original strand, 39063143 - 39063283
Alignment:
Q  72 aaagaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaa 171  Q
    ||||||||||| | || | ||||  ||||||||||||| | ||| | ||||||||||||||  | || | ||||| |||||||||||||||||||| |||    
T  39063143 aaagaaaattgttgttctgacatacataacttcacaataatacatggaaattacctaaaagcccccatcagtagtaaactaccgttgagcaatccgacaa 39063242  T
Q  172 caattaactgccgttgaggccaacggtagttaactaccgct 212  Q
    || |||||||||| ||  ||||||||| ||||||| |||||    
T  39063243 cagttaactgccgctggtgccaacggttgttaactgccgct 39063283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 153
Target Start/End: Original strand, 33216334 - 33216412
Alignment:
Q  75 gaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactac 153  Q
    |||||||| |||||| ||||| | ||||||||||||||||||| ||| ||| |||| | ||||||||||||||||||||    
T  33216334 gaaaattgtttttttgacattgaaaacttcacaatgacacaagtaaaatacttaaatgctctcagcggtagttaactac 33216412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 109 - 206
Target Start/End: Complemental strand, 36791582 - 36791485
Alignment:
Q  109 tgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaacaattaactgccgttgaggccaacggtagttaact 206  Q
    ||||||||||||||||||| | ||| | |||| ||||||||||||||||| || | |||||| || |||||||||| ||  ||||| |||||||||||    
T  36791582 tgacacaagaaaattaccttatagtccccagccgtagttaactaccgttgggctaaccggcagcagttaactgccgctggtgccaatggtagttaact 36791485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 13282568 - 13282675
Alignment:
Q  77 aaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaacaatt 176  Q
    |||||| |||| | ||||| |||| ||||||| |||||| ||||||||| |||||||| ||| ||||||||||| | |||||  | | |||||| || ||    
T  13282568 aaattgtttttctgacattcataatttcacaacgacacatgaaaattacataaaagttttcaacggtagttaacaatcgttggtctaaccggcagcagtt 13282667  T
Q  177 aactgccg 184  Q
    ||||||||    
T  13282668 aactgccg 13282675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 17374053 - 17373986
Alignment:
Q  91 acatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttg 158  Q
    ||||| ||||||||||||||||| | ||||||||| ||||||   |||||||||||||||| ||||||    
T  17374053 acattcataacttcacaatgacatatgaaaattacataaaagccttcagcggtagttaactgccgttg 17373986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 13287648 - 13287558
Alignment:
Q  91 acatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaacaattaactg 181  Q
    ||||| |||| |||||||||||| || ||||||||||||||    |||||||||||||| ||||||||  ||| |||||| || |||||||    
T  13287648 acattcataatttcacaatgacataaaaaaattacctaaaatccttcagcggtagttaattaccgttggacaaaccggcagcagttaactg 13287558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 21762126 - 21762040
Alignment:
Q  72 aaagaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttg 158  Q
    ||||||||||| |||| | ||||| |||| |||||| ||||| ||| ||| |||||||| || |  |||||||||||||||||||||    
T  21762126 aaagaaaattgtttttctgacattcataagttcacattgacataagtaaaatacctaaatgtccctagcggtagttaactaccgttg 21762040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 37770860 - 37770750
Alignment:
Q  73 aagaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaac 172  Q
    |||||||||| |||| | ||||| |||| |||||| ||||||||| ||| || ||||| |  || ||  ||||||||||||||||||  |  ||||||||    
T  37770860 aagaaaattgcttttctgacattgataagttcacattgacacaagtaaaatatctaaatgcccttagtagtagttaactaccgttgaaaataccggcaac 37770761  T
Q  173 aattaactgcc 183  Q
    |||||||||||    
T  37770760 aattaactgcc 37770750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 16082962 - 16082867
Alignment:
Q  140 cggtagttaactaccgttgagcaatccggcaacaattaactgccgttgaggccaacggtagttaactaccgctacatgcgttctgagattcaacct 235  Q
    ||||||||||||||||||  |||| ||| ||  | |||||||||| |||||||| |||||||||||| || ||||   | ||||| ||||||||||    
T  16082962 cggtagttaactaccgttctgcaaaccgacagtagttaactgccgctgaggccagcggtagttaactgccactactgtccttctgggattcaacct 16082867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 184
Target Start/End: Complemental strand, 31870068 - 31869969
Alignment:
Q  85 tttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaacaattaactgccg 184  Q
    ||||| ||||| | || |||||||||||||| | |||| ||||||||     |||||||||||||||||||||   ||| |||||| |||||||||||||    
T  31870068 tttttgacattgagaagttcacaatgacacatgtaaatgacctaaaaacctgcagcggtagttaactaccgtttgccaaaccggcagcaattaactgccg 31869969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 75 - 212
Target Start/End: Original strand, 24432 - 24569
Alignment:
Q  75 gaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaat-ccggcaaca 173  Q
    |||||||  |||||| ||||| |||| |||||| ||||||||| ||| ||||||| ||  | || |||| |||||||||||||| | ||| |||||||||    
T  24432 gaaaatttcttttttgacattgataagttcacattgacacaagtaaaatacctaatagcccccaacggtggttaactaccgttg-gaaataccggcaaca 24530  T
Q  174 attaactgccgttgaggccaacggtagttaactaccgct 212  Q
     |||||||||| ||  |||| |||||||||||| |||||    
T  24531 gttaactgccgctggtgccagcggtagttaactgccgct 24569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 32382 - 32321
Alignment:
Q  99 aacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgag 160  Q
    ||||||||||||||||||| ||| ||| |||| |  | ||||||||||||||||||||||||    
T  32382 aacttcacaatgacacaagtaaaatacttaaatgcccccagcggtagttaactaccgttgag 32321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 74 - 212
Target Start/End: Original strand, 6253301 - 6253439
Alignment:
Q  74 agaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaaca 173  Q
    ||||||||| |||| ||||||  | ||||||||||||||||||| ||| ||  |||| |  | || |||||||||||||||| ||   ||  ||||||||    
T  6253301 agaaaattgcttttctaacatagaaaacttcacaatgacacaagtaaaataattaaatgcccccaacggtagttaactaccgctggaaaaatcggcaaca 6253400  T
Q  174 attaactgccgttgaggccaacggtagttaactaccgct 212  Q
     |||||||||| ||   ||||||||||||||||||||||    
T  6253401 gttaactgccgctggacccaacggtagttaactaccgct 6253439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 8037067 - 8037014
Alignment:
Q  318 ataaaaaccctcacattctcacattttctcacattctttcctccttactttcat 371  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||    
T  8037067 ataaaaaccctcacattctcacatttcctcgcattctctcctccttactctcat 8037014  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 33074629 - 33074576
Alignment:
Q  318 ataaaaaccctcacattctcacattttctcacattctttcctccttactttcat 371  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||||||| ||||    
T  33074629 ataaaaatcctcacattctcacatttactcacattctctcctccttactctcat 33074576  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 187
Target Start/End: Original strand, 44373990 - 44374103
Alignment:
Q  74 agaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttct-cagcggtagttaactaccgttgagcaatccggcaac 172  Q
    ||||||||| |||| | ||||| ||||||||||||||||||||| |||| | |||||    || || ||||||||||||||| ||||   ||||||||||    
T  44373990 agaaaattgcttttctgacattcataacttcacaatgacacaagtaaatga-ctaaattacctccaacggtagttaactaccattgatatatccggcaac 44374088  T
Q  173 aattaactgccgttg 187  Q
    |||||||| ||||||    
T  44374089 aattaactaccgttg 44374103  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 775653 - 775701
Alignment:
Q  136 tcagcggtagttaactaccgttgagcaatccggcaacaattaactgccg 184  Q
    |||| |||||||||||||||||||| || ||||||||| ||||||||||    
T  775653 tcaggggtagttaactaccgttgaggaagccggcaacagttaactgccg 775701  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 781307 - 781355
Alignment:
Q  136 tcagcggtagttaactaccgttgagcaatccggcaacaattaactgccg 184  Q
    |||| |||||||||||||||||||| || ||||||||| ||||||||||    
T  781307 tcaggggtagttaactaccgttgaggaagccggcaacagttaactgccg 781355  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 6253664 - 6253584
Alignment:
Q  75 gaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccg 155  Q
    |||||||| |||| ||||||  | ||||||||||||||||||| ||| ||| |||| || | | |||||||||||||||||    
T  6253664 gaaaattgcttttctaacatagaaaacttcacaatgacacaagtaaaatacttaaatgtcccccgcggtagttaactaccg 6253584  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 34587657 - 34587741
Alignment:
Q  100 acttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaacaattaactgccg 184  Q
    |||||||||||||||| ||||||| | ||||||    || |||||||||||||||||| ||||| |||||| || |||| |||||    
T  34587657 acttcacaatgacacatgaaaattgcttaaaagcctccaacggtagttaactaccgttcagcaacccggcagcagttaattgccg 34587741  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 18701703 - 18701604
Alignment:
Q  111 acacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaacaattaactgccgttgaggccaacggtagttaactaccg 210  Q
    ||||| ||||||| | ||||||  |||||||||||||||||||||||||| || || | | || |||||||||| ||    ||| |||||||||||||||    
T  18701703 acacatgaaaattccttaaaagccctcagcggtagttaactaccgttgaggaagccagtagcagttaactgccgctggcctcaatggtagttaactaccg 18701604  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 187
Target Start/End: Original strand, 16583186 - 16583302
Alignment:
Q  71 taaagaaaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggca 170  Q
    |||||||||||| |||||| ||||  |  |||||  | ||||||||| || ||||  |||||  | |||||||||||||||||||||| | || ||| |     
T  16583186 taaagaaaattgcttttttgacatggaatacttcctattgacacaagtaatttactaaaaagcccccagcggtagttaactaccgttgggaaaaccgccg 16583285  T
Q  171 acaattaactgccgttg 187  Q
    ||| |||||||||||||    
T  16583286 acagttaactgccgttg 16583302  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 21511180 - 21511112
Alignment:
Q  144 agttaactaccgttgagcaatccggcaacaattaactgccgttgaggccaacggtagttaactaccgct 212  Q
    ||||||| ||||||| |||| | || | || |||||||||| |||  ||||||||||||||||||||||    
T  21511180 agttaaccaccgttgggcaaactgggagcagttaactgccgctgaacccaacggtagttaactaccgct 21511112  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 42450038 - 42449950
Alignment:
Q  99 aacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgagcaatccggcaacaattaactgccgttg 187  Q
    ||||||||| ||||||||| ||||||| | || |  || ||||||||||||||||||||||| || ||| |  || |||||||||||||    
T  42450038 aacttcacattgacacaagcaaattacgttaaggcccttagcggtagttaactaccgttgagaaaaccgccggcagttaactgccgttg 42449950  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 36759274 - 36759191
Alignment:
Q  77 aaattgattttttaacatttataacttcacaatgacacaagaaaattacctaaaagttctcagcggtagttaactaccgttgag 160  Q
    |||||| |||||| ||||  | ||||||||| ||||||||| ||| ||||| || |  | ||||||||||||||||||||||||    
T  36759274 aaattgcttttttgacataaaaaacttcacattgacacaagtaaaatacctgaatgcccccagcggtagttaactaccgttgag 36759191  T

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