View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6217_high_2 (Length: 451)

Name: NF6217_high_2
Description: NF6217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6217_high_2
NF6217_high_2
[»] chr7 (6 HSPs)
chr7 (17-67)||(40771209-40771259)
chr7 (17-67)||(26451033-26451083)
chr7 (22-67)||(267866-267911)
chr7 (22-67)||(278933-278978)
chr7 (17-67)||(5172841-5172891)
chr7 (22-67)||(29148837-29148882)
[»] scaffold0502 (2 HSPs)
scaffold0502 (17-67)||(4208-4258)
scaffold0502 (17-67)||(8908-8958)
[»] scaffold0045 (1 HSPs)
scaffold0045 (17-67)||(30054-30104)
[»] chr6 (4 HSPs)
chr6 (17-67)||(32932432-32932482)
chr6 (17-67)||(18338084-18338134)
chr6 (17-67)||(15121641-15121691)
chr6 (17-67)||(23848687-23848737)
[»] chr1 (8 HSPs)
chr1 (17-67)||(24515472-24515522)
chr1 (17-67)||(39574466-39574516)
chr1 (22-67)||(12017853-12017898)
chr1 (22-67)||(39580482-39580527)
chr1 (17-63)||(24523222-24523268)
chr1 (22-67)||(41140845-41140890)
chr1 (22-61)||(47854701-47854740)
chr1 (22-61)||(47858085-47858124)
[»] chr4 (10 HSPs)
chr4 (22-67)||(13393799-13393844)
chr4 (22-67)||(13396938-13396983)
chr4 (22-67)||(43444876-43444921)
chr4 (22-66)||(35905112-35905156)
chr4 (17-67)||(36048861-36048911)
chr4 (17-67)||(2228828-2228878)
chr4 (17-67)||(6262176-6262226)
chr4 (17-67)||(44160836-44160886)
chr4 (22-67)||(42567769-42567814)
chr4 (22-67)||(54256215-54256260)
[»] chr3 (14 HSPs)
chr3 (22-67)||(41272936-41272981)
chr3 (17-64)||(39039874-39039921)
chr3 (17-67)||(3469823-3469873)
chr3 (17-67)||(19240633-19240683)
chr3 (17-67)||(32285835-32285885)
chr3 (17-65)||(29961040-29961088)
chr3 (17-65)||(30010245-30010293)
chr3 (23-67)||(31112351-31112395)
chr3 (17-64)||(39032862-39032909)
chr3 (17-67)||(10626408-10626458)
chr3 (17-67)||(11172130-11172180)
chr3 (25-67)||(32280899-32280941)
chr3 (17-67)||(38445617-38445667)
chr3 (17-65)||(46611791-46611839)
[»] chr2 (10 HSPs)
chr2 (22-67)||(39190080-39190125)
chr2 (22-67)||(41826535-41826580)
chr2 (17-67)||(662752-662802)
chr2 (17-67)||(669984-670034)
chr2 (17-67)||(18341689-18341739)
chr2 (17-67)||(25336151-25336201)
chr2 (17-67)||(40113380-40113432)
chr2 (17-55)||(15144382-15144420)
chr2 (22-67)||(33030518-33030563)
chr2 (22-67)||(33425894-33425939)
[»] chr8 (4 HSPs)
chr8 (23-67)||(18324765-18324809)
chr8 (17-67)||(1262291-1262341)
chr8 (22-67)||(44626094-44626139)
chr8 (22-67)||(45272831-45272876)
[»] chr5 (6 HSPs)
chr5 (17-67)||(22729804-22729854)
chr5 (17-67)||(36950250-36950300)
chr5 (17-67)||(43097417-43097467)
chr5 (22-65)||(10491169-10491212)
chr5 (17-67)||(11339796-11339846)
chr5 (17-54)||(35941236-35941273)
[»] scaffold0062 (1 HSPs)
scaffold0062 (17-67)||(40261-40311)
[»] scaffold0027 (1 HSPs)
scaffold0027 (23-67)||(134672-134716)


Alignment Details
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 40771259 - 40771209
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40771259 cacacatattcatcaactaattagtgtttaacacaatagaccataatttat 40771209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 26451033 - 26451083
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| |||||||||| |||||||||| ||||||||||||||||||||||||    
T  26451033 cacaaatattcatcatctaattagtgcttaacacaatagaccataatttat 26451083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 267866 - 267911
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  267866 atattcatcaactaattagtgcttaacgcaatagaccataatttat 267911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 278933 - 278978
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  278933 atattcatcaactaattagtgcttaacgcaatagaccataatttat 278978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 5172891 - 5172841
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||||||||||||| |||| |||||||| ||||||||||    
T  5172891 cacatatattcatcaactaattagtgcttaatacaatagatcataatttat 5172841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 29148837 - 29148882
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||||||||||||||||||||||||| || |||||| |||||||||    
T  29148837 atattcatcaactaattagtgtttaataccatagactataatttat 29148882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 4258 - 4208
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  4258 cacacatattcataaactaattagtgtttaacacaatagaccataatttat 4208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 8958 - 8908
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| |||||||| |||||||||||| ||||||||||||||||||||||||    
T  8958 cacacatattcataaactaattagtgcttaacacaatagaccataatttat 8908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 30104 - 30054
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  30104 cacacatattcatcaactaattagtgtttaacacaatagatcataatttat 30054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 32932432 - 32932482
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  32932432 cacacatattcatcaattaattagtgtttaacacaatagaccataatttat 32932482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 18338134 - 18338084
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| |||||||| |||||||||||| ||||||||||||||||||||||||    
T  18338134 cacacatattcataaactaattagtgcttaacacaatagaccataatttat 18338084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 15121641 - 15121691
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||||||||||||  ||||||||||| ||||||||||||    
T  15121641 cacacatattcatcaactaattagttattaacacaatataccataatttat 15121691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 23848687 - 23848737
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||| ||||||||| || |||||||||||||||||||||    
T  23848687 cacacatattcatcaattaattagtgctttacacaatagaccataatttat 23848737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 24515472 - 24515522
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  24515472 cacacatattcatcaactaattagtgcttaacacaatagaccataatttat 24515522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 39574516 - 39574466
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  39574516 cacacatattcatcaactaattagtgcttaacacaatagaccataatttat 39574466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 12017853 - 12017898
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  12017853 atattcatcaactaattagtgtttaacacaatagatcataatttat 12017898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 39580527 - 39580482
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||    
T  39580527 atattcatcaactaattagtacttaacacaatagaccataatttat 39580482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 24523222 - 24523268
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataat 63  Q
    |||| ||||||||||| ||||||||| ||||||||||||||||||||    
T  24523222 cacacatattcatcaattaattagtgcttaacacaatagaccataat 24523268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 41140890 - 41140845
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||||||||||||||||| || |||||| |||||||||||||||||    
T  41140890 atattcatcaactaattaatgcttaacataatagaccataatttat 41140845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 47854740 - 47854701
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccata 61  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  47854740 atattcatcaactaatgagtgtttaatacaatagaccata 47854701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 47858124 - 47858085
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccata 61  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  47858124 atattcatcaactaatgagtgtttaatacaatagaccata 47858085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 13393799 - 13393844
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  13393799 atattcatcaactaattagtgtttaactcaatagaccataatttat 13393844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 13396938 - 13396983
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  13396938 atattcatcaactaattagtgtttaactcaatagaccataatttat 13396983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 43444921 - 43444876
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  43444921 atattcatcaactaatgagtgtttaacacaatagaccataatttat 43444876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 35905112 - 35905156
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataattta 66  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  35905112 atattcatcaactaattagtgcttaacacaatagaccataattta 35905156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 36048911 - 36048861
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| |||||||||| |||||||||||||||||||| ||||||||||||||    
T  36048911 cacacatattcatcatctaattagtgtttaacacaaaagaccataatttat 36048861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 2228878 - 2228828
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||||||||||||| | ||| ||||||||||||||||||    
T  2228878 cacacatattcatcaactaattagtgctcaactcaatagaccataatttat 2228828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 6262226 - 6262176
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| |||||| |||| ||||||||| ||||||||||||||||||||||||    
T  6262226 cacacatattcgtcaattaattagtgcttaacacaatagaccataatttat 6262176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 44160836 - 44160886
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||||||||| ||  ||||||||||||||||||||||||    
T  44160836 cacacatattcatcaactaatttgtacttaacacaatagaccataatttat 44160886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 42567769 - 42567814
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||||||||||||||||| || ||||| ||||||||||||||||||    
T  42567769 atattcatcaactaattaatgcttaacgcaatagaccataatttat 42567814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 54256260 - 54256215
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  54256260 atattcatcaattaattagtgcttaacacaatagatcataatttat 54256215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 41272981 - 41272936
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  41272981 atattcatcaactaattagtgcttaacacaatagaccataatttat 41272936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 39039874 - 39039921
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatt 64  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||    
T  39039874 cacacatattcatcaactaattagtgtttaacagaatagaccataatt 39039921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 3469873 - 3469823
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||| ||||||||| ||||||||||||||||||||||||    
T  3469873 cacacatattcatcaattaattagtgcttaacacaatagaccataatttat 3469823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 19240633 - 19240683
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||||||||||||| ||||||||||| ||||||||||||    
T  19240633 cacacatattcatcaactaattagtgcttaacacaatataccataatttat 19240683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 32285835 - 32285885
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||    
T  32285835 cacacatattcatcaactaattagtgtttaacagaataaaccataatttat 32285885  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 29961040 - 29961088
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataattt 65  Q
    |||| |||||||||||||||||| || ||||||||||||||||||||||    
T  29961040 cacacatattcatcaactaattaatgcttaacacaatagaccataattt 29961088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 30010245 - 30010293
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataattt 65  Q
    |||| |||||||||||||||||| || ||||||||||||||||||||||    
T  30010245 cacacatattcatcaactaattaatgcttaacacaatagaccataattt 30010293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 31112395 - 31112351
Alignment:
Q  23 tattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||||||||||||||||||  ||||||||||||||||||||||||    
T  31112395 tattcatcaactaattagtacttaacacaatagaccataatttat 31112351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 39032862 - 39032909
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatt 64  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||    
T  39032862 cacacatattcatcaactaattagtgcttaacagaatagaccataatt 39032909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 10626408 - 10626458
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| |||| |||| ||||||||||| ||||||||||||||||||||||||    
T  10626408 cacacatatccatctactaattagtgcttaacacaatagaccataatttat 10626458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 11172130 - 11172180
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||||||||||||| ||| || |||||||||||||||||    
T  11172130 cacacatattcatcaactaattagtgcttatcagaatagaccataatttat 11172180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 32280899 - 32280941
Alignment:
Q  25 ttcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||||||||||||||||| |||| | |||||||||||||||||    
T  32280899 ttcatcaactaattagtgcttaatagaatagaccataatttat 32280941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 38445667 - 38445617
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| |||||||||||||||||| || |||||  |||||||||||||||||    
T  38445667 cacacatattcatcaactaattaatgcttaactgaatagaccataatttat 38445617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 46611839 - 46611791
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataattt 65  Q
    |||| ||||| |||| |||||||||| |||||||||||||| |||||||    
T  46611839 cacacatatttatcatctaattagtgcttaacacaatagactataattt 46611791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 39190125 - 39190080
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  39190125 atattcatcaactaattaatgtttaacacaatagaccataatttat 39190080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 41826580 - 41826535
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  41826580 atattcatcaactaattagtgcttaacacaatagaccataatttat 41826535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 662802 - 662752
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||| ||||||||||||||||||||| |||| |||||||    
T  662802 cacacatattcatcaagtaattagtgtttaacacaataaaccacaatttat 662752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 670034 - 669984
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||| ||||||||| |||||||||||||||| |||||||    
T  670034 cacacatattcatcaagtaattagtgcttaacacaatagaccacaatttat 669984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 18341689 - 18341739
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| |||||||||| |||||||||| ||||||||||||| ||||||||||    
T  18341689 cacacatattcatcatctaattagtgcttaacacaatagatcataatttat 18341739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 25336201 - 25336151
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||||||||||||| ||||||||| |||||||| |||||    
T  25336201 cacacatattcatcaactaattagtgcttaacacaacagaccatagtttat 25336151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 40113432 - 40113380
Alignment:
Q  17 cacagatattcatcaactaatta--gtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  40113432 cacacatattcatcaactaattatagtgcttaacacaatagaccataatttat 40113380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 15144382 - 15144420
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatag 55  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  15144382 cacacatattcatcaactaattagtgcttaacacaatag 15144420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 33030563 - 33030518
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    ||||||| |||||||||||| ||||||| ||| |||||||||||||    
T  33030563 atattcaccaactaattagtatttaacataattgaccataatttat 33030518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 33425939 - 33425894
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||||||||| |||||| ||||||||||||||| | ||||||||||    
T  33425939 atattcatcatctaattcgtgtttaacacaatacatcataatttat 33425894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 18324809 - 18324765
Alignment:
Q  23 tattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  18324809 tattcatcaactaattagtgcttaacacaatagaccataatttat 18324765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 1262341 - 1262291
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  1262341 cacacatattcatcaactaattagtgcttaacacaatagatcataatttat 1262291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 44626139 - 44626094
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||    
T  44626139 atattcatcaactaattagtgcttaacacaataaaccataatttat 44626094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 45272831 - 45272876
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||    
T  45272831 atattcatcaactaattagtgtttaacacgatagaccatagtttat 45272876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 22729854 - 22729804
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  22729854 cacacatattcatcaactaattagtgcttaacacaatagatcataatttat 22729804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 36950250 - 36950300
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||||||||||||| ||||||||||| ||||||||||||    
T  36950250 cacacatattcatcaactaattagtgcttaacacaataaaccataatttat 36950300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 43097467 - 43097417
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  43097467 cacacatattcatcaactaactagtgcttaactcaatagaccataatttat 43097417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 10491212 - 10491169
Alignment:
Q  22 atattcatcaactaattagtgtttaacacaatagaccataattt 65  Q
    |||||||| ||||||||||||  |||||||||||||||||||||    
T  10491212 atattcattaactaattagtgcctaacacaatagaccataattt 10491169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 11339846 - 11339796
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| |||||||| ||||||| |||| |||| |||||||||||||||||||    
T  11339846 cacatatattcattaactaatcagtgcttaatacaatagaccataatttat 11339796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 35941236 - 35941273
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaata 54  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  35941236 cacacatattcatcaactaattagtgcttaacacaata 35941273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 40261 - 40311
Alignment:
Q  17 cacagatattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    |||| ||||||||||||||||||||| ||| |||| |||||||||||||||    
T  40261 cacacatattcatcaactaattagtgcttagcacagtagaccataatttat 40311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 134672 - 134716
Alignment:
Q  23 tattcatcaactaattagtgtttaacacaatagaccataatttat 67  Q
    ||||||||||||||| ||||||||||| |||| ||||||||||||    
T  134672 tattcatcaactaatcagtgtttaacagaatataccataatttat 134716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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