View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6217_low_1 (Length: 468)
Name: NF6217_low_1
Description: NF6217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6217_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 182 - 450
Target Start/End: Complemental strand, 39797649 - 39797381
Alignment:
| Q |
182 |
taatgatatacatgcttaatgctacaagtttgagaagaaaagcaatgaatcatccatttcaatttcaaatagaaatgaataaaatgaataaggtgaatct |
281 |
Q |
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| T |
39797649 |
taatgatatacatgcttaatgctacaagtttgagaagaaaagcaatgaatcatccatttcaatttcaaatagaaatgaataaaatgaataaggtgaatct |
39797550 |
T |
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| Q |
282 |
tatcttacaacaataaaggaagtatcaacacaatcagcttctagttcctccaatatgctctttccttgagcatcatcagcaaccttggagatgagtttcg |
381 |
Q |
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| T |
39797549 |
tatcttacaacaataaaggaagtatcaacacaatcagcttctagttcctccaatatgctctttccttgagcatcatcagcaaccttggagatgagtttcg |
39797450 |
T |
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| Q |
382 |
gtttcaagccaagtcgagcagcgcaagttaaagcattaccggcatttccacctccttgaaccttggagg |
450 |
Q |
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| T |
39797449 |
gtttcaagccaagtcgagcagcgcaagttaaagcatttccggcatttccacctccttgaaccttggagg |
39797381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 39797866 - 39797677
Alignment:
| Q |
1 |
atacaagtaactggcttacgtttgggtgtctactagtacatacgaaaatgttgaactgccacccttggatacctgaaaaataaaacaataacctttcaac |
100 |
Q |
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| T |
39797866 |
atacaagtaactggcttacgtttgggtgtctactagtacatacgaaaatgttgaactgccacccttggatacctgaaaaataaaagaataacctttctac |
39797767 |
T |
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| Q |
101 |
tcagaaagtgataactaatcaggatagaagtgaaaacagtgaagcagaaaaattctttaaaacattg---catcctgataaaagtaatga |
187 |
Q |
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| T |
39797766 |
tcagaaagtgataactaatcaggatagaagtgaaaacagtgaagcagaaaaattctttaaaacattgcatcatcctgataaaagtaatga |
39797677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 408 - 444
Target Start/End: Original strand, 29929913 - 29929949
Alignment:
| Q |
408 |
gttaaagcattaccggcatttccacctccttgaacct |
444 |
Q |
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| T |
29929913 |
gttaaagcattgccggcattaccacctccttgaacct |
29929949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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