View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6217_low_10 (Length: 252)
Name: NF6217_low_10
Description: NF6217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6217_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 48870113 - 48870335
Alignment:
| Q |
12 |
atcatcattcatatccttcctttttctagttggcttttcatcttgatcagaatttcttgtcacagctgaatctattccatttccactatcaaaattaggc |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48870113 |
atcatcattcatatccttcctttttctagttggcttttcattttgatcagaatttcttgtcacagctgaatctattacatttccactatcaaaattaggc |
48870212 |
T |
|
| Q |
112 |
acatcatgattgcttcttttgctagttttcttcttcctaattacatgttgccaaatcatctgtacctctttcaatgtaacaggtttcagaagataatcac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48870213 |
acatcatgattgcttcttttgctagttttcttcttcctaattacatgttgccaaatcatctgtacctctttcaatgtaacaggtttcagaagataatcac |
48870312 |
T |
|
| Q |
212 |
aagcaccatgatcaattcctttc |
234 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
48870313 |
aagcaccatgatcaattcctttc |
48870335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 2905074 - 2904851
Alignment:
| Q |
11 |
catcatcattcatatccttcctttttctagttggcttttcatcttgatcagaatttcttgtcacagctgaatctattccatttccactatcaaaattagg |
110 |
Q |
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|||| |||||| | |||||||||||||||| ||||||||||| |||||| |||||| |||| ||||||||| ||||||||||||| |||| ||||||| |
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| T |
2905074 |
catcttcattcttctccttcctttttctagatggcttttcattttgatcgaaatttcctgtccgagctgaatcgattccatttccacaatcagaattagg |
2904975 |
T |
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| Q |
111 |
cacatcatgattgcttcttttgctagttttcttcttcctaattacatgttgccaaatcatctgtacctctttcaatgtaacaggtttcagaagataatca |
210 |
Q |
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| T |
2904974 |
cgcatcacgattgcttcttttgttagttttcttcttcctgactacatgttgccaaatcatttgtacctccttcaatgtaacaggtttcagcagataatca |
2904875 |
T |
|
| Q |
211 |
caagcaccatgatcaattcctttc |
234 |
Q |
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|||||||||||||||||||||||| |
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| T |
2904874 |
caagcaccatgatcaattcctttc |
2904851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 2888977 - 2888754
Alignment:
| Q |
11 |
catcatcattcatatccttcctttttctagttggcttttcatcttgatcagaatttcttgtcacagctgaatctattccatttccactatcaaaattagg |
110 |
Q |
| |
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|||| |||||| |||||||||||||||||| |||||||||| |||||||||||||| ||| |||| |||||| | ||||||||||||||| ||||||| |
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| T |
2888977 |
catcttcattcttatccttcctttttctagatggcttttcaatttgatcagaatttccagtcccagccgaatctttcccatttccactatcagaattagg |
2888878 |
T |
|
| Q |
111 |
cacatcatgattgcttcttttgctagttttcttcttcctaattacatgttgccaaatcatctgtacctctttcaatgtaacaggtttcagaagataatca |
210 |
Q |
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| || |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| | |||||||||||| ||||||||| |
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| T |
2888877 |
tgcgtcgtgattgcttcttttgctagttttcttcttcctgattacatgctgccaaatgatctgtacctctttcagtctaacaggtttcaccagataatca |
2888778 |
T |
|
| Q |
211 |
caagcaccatgatcaattcctttc |
234 |
Q |
| |
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||||||||||| |||||||||||| |
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|
| T |
2888777 |
caagcaccatgttcaattcctttc |
2888754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 2893565 - 2893342
Alignment:
| Q |
11 |
catcatcattcatatccttcctttttctagttggcttttcatcttgatcagaatttcttgtcacagctgaatctattccatttccactatcaaaattagg |
110 |
Q |
| |
|
|||| |||||| |||||||||||||||||| || | |||||| || ||||||||||| |||| | || |||||| | ||||||||||||||| |||| || |
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| T |
2893565 |
catcttcattcttatccttcctttttctagatgccctttcatttttatcagaatttcctgtccccgccgaatctttcccatttccactatcagaattggg |
2893466 |
T |
|
| Q |
111 |
cacatcatgattgcttcttttgctagttttcttcttcctaattacatgttgccaaatcatctgtacctctttcaatgtaacaggtttcagaagataatca |
210 |
Q |
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| | ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| | ||||||||||||| ||||||||| |
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| T |
2893465 |
cgcgtcatgattgcttcttttgctagttttcttcttcctgattacatgctgccaaatgatctgtacctctttcagtctaacaggtttcagcagataatca |
2893366 |
T |
|
| Q |
211 |
caagcaccatgatcaattcctttc |
234 |
Q |
| |
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|||||||| || |||||||||||| |
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| T |
2893365 |
caagcaccgtgttcaattcctttc |
2893342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 234
Target Start/End: Original strand, 49060906 - 49061001
Alignment:
| Q |
139 |
ttcttcttcctaattacatgttgccaaatcatctgtacctctttcaatgtaacaggtttcagaagataatcacaagcaccatgatcaattcctttc |
234 |
Q |
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|||||||||||||||||||| |||||||| ||| || ||| | ||| | ||||||||||| ||||||||||| |||||||| |||||||||| |
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| T |
49060906 |
ttcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtttcagcagataatcacaggcaccatgggaaattcctttc |
49061001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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