View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6217_low_3 (Length: 421)
Name: NF6217_low_3
Description: NF6217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6217_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 42199347 - 42198944
Alignment:
| Q |
18 |
caaaataattgagt---atgtctagttaaaaattggagaggatgtttgtgttgtttaagaaaaccttatcagaggttagtgtaatttacctttataaaac |
114 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42199347 |
caaaataattgagtttaatgtctagttaaaaattggagaggatgtttgtgttgtttaagaaaaccttatcagaggttagtgtaatttacctttataaaac |
42199248 |
T |
|
| Q |
115 |
taatcctactggactattatggagttatttggataagnnnnnnn-gaagaaaaacaaacagtttttcgattcactatggttataatgatataaaaaggtt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42199247 |
taatcctactggactattatggagttatttggataagaaaaaagagaagaaaaacaaacagtttttcgattcactatggttataatgatataaaaaggtt |
42199148 |
T |
|
| Q |
214 |
acaacaacttgaaaaacctcactcatttgactcttggttataactatctcacttccaccacatcattgaattttcagttctttgattcccttaaaaactc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42199147 |
acaacaacttgaaaaacctcactcatttgactcttggttataactatctcacttccaccacatcattgaattttcagttctttgattcccttaaaaactc |
42199048 |
T |
|
| Q |
314 |
aactcagttgcaagttcttatggtcaattataacaacttgactggggaacttccaaattctgttgaatatctgtgaggcaatctacaacagttctgtgct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42199047 |
aactcagttgcaagttcttatggtcaattataacaacttgactggggaacttccaaattctgttgaatatctgtgaggcaatctacaacagttctgtgtt |
42198948 |
T |
|
| Q |
414 |
gctc |
417 |
Q |
| |
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|||| |
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|
| T |
42198947 |
gctc |
42198944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 215 - 416
Target Start/End: Complemental strand, 42211717 - 42211516
Alignment:
| Q |
215 |
caacaacttgaaaaacctcactcatttgactcttggttataactatctcacttccaccacatcattgaattttcagttctttgattcccttaaaaactca |
314 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
42211717 |
caacaacttgaaaaacctcactcatttgactcttggtaaaaactatctcacttccaacacatcattgaattttcagttctttgaatcccttcgaaactca |
42211618 |
T |
|
| Q |
315 |
actcagttgcaagttcttatggtcaattataacaacttgactggggaacttccaaattctgttgaatatctgtgaggcaatctacaacagttctgtgctg |
414 |
Q |
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||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||| ||| ||||| ||||| | | |||||||||||||||| |||| || |
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| T |
42211617 |
actcagttgcagattcttatgatcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttttgtgttg |
42211518 |
T |
|
| Q |
415 |
ct |
416 |
Q |
| |
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|| |
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|
| T |
42211517 |
ct |
42211516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 215 - 416
Target Start/End: Complemental strand, 42223933 - 42223732
Alignment:
| Q |
215 |
caacaacttgaaaaacctcactcatttgactcttggttataactatctcacttccaccacatcattgaattttcagttctttgattcccttaaaaactca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| || | || ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42223933 |
caacaacttgaaaaacctcactcatttgtatctcagtaagaataatctcacttccactacatcattgaattttcagttctttgattcccttcgaaactca |
42223834 |
T |
|
| Q |
315 |
actcagttgcaagttcttatggtcaattataacaacttgactggggaacttccaaattctgttgaatatctgtgaggcaatctacaacagttctgtgctg |
414 |
Q |
| |
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|||||||| ||| |||||||||||||| ||||||||||||| ||||||||||||| ||| ||||| ||||| | | |||||||||||||||| |||| || |
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| T |
42223833 |
actcagttacaaattcttatggtcaatgataacaacttgaccggggaacttccaagttcggttgattatctttcaagcaatctacaacagttttgtgttg |
42223734 |
T |
|
| Q |
415 |
ct |
416 |
Q |
| |
|
|| |
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|
| T |
42223733 |
ct |
42223732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 11669677 - 11669615
Alignment:
| Q |
39 |
gttaaaaattggagaggatgtttgtgttgtttaagaaaaccttatcagaggttagtgtaattt |
101 |
Q |
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|||||||| | ||| ||||||||||||| |||||||| ||||||| |||||||||||||||| |
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|
| T |
11669677 |
gttaaaaaatagagtggatgtttgtgttatttaagaagaccttatgggaggttagtgtaattt |
11669615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 37767513 - 37767586
Alignment:
| Q |
31 |
tatgtctagttaaaaattggagaggatgtttgtgttgtttaagaaaaccttatcagaggttagtgtaatttacc |
104 |
Q |
| |
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||||| |||||||||| | ||| ||||||||||||| ||||| || |||| | ||||||||||||||||||| |
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| T |
37767513 |
tatgtttagttaaaaactagaggggatgtttgtgttatttaacaatacctcaggggaggttagtgtaatttacc |
37767586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 27433007 - 27433051
Alignment:
| Q |
57 |
tgtttgtgttgtttaagaaaaccttatcagaggttagtgtaattt |
101 |
Q |
| |
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|||||||||| ||||||||||||||| |||||||||||||||| |
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|
| T |
27433007 |
tgtttgtgttatttaagaaaaccttacgggaggttagtgtaattt |
27433051 |
T |
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